feat: add prokka and bakta for annotation #4
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rabioinf
requested changes
Dec 5, 2025
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- pgap will fail, if the full path is not defined in the output of
prepare_yaml_files. The full path is required otherwise pgap will not work. - add the option to be able to define the path to a bakta db that is already downloaded
- add functionality to run annotation with multiple tools
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Hi Rina, point 2 and 3 I get, but for point 1 with PGAP paths I don't really know what you mean. I've not changed the PGAP logic as far as I'm aware. But I will test. |
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closes #3 , closes #5, closes #6, closes #7