merging in new QTL COLOC features - and cleaning up run_COLOC.R#10

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jackhump wants to merge 6 commits intomasterfrom

Commits on Feb 23, 2024

added QTL-QTL coloc - still fixing bugs
jackhump
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Commits on Mar 29, 2024

added qtl coloc to the snakemake pipeline
jackhump
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Commits on Apr 3, 2024

remove duplicate snp-genes caused by multi-allellic SNPs
jackhump
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Commits on Apr 11, 2024

updates; still working on pairwise QTL coloc
jackhump
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Commits on Sep 5, 2024

fixed bug on outfolder
jackhump
committed

Commits on Feb 24, 2025

updates - allow custom MAF, fix bugs
jackhump
committed