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Summary

This PR standardizes the project with comprehensive CI/CD workflows and testing infrastructure.

Changes

GitHub Actions Workflows

  • test.yml: Comprehensive testing across Python 3.8-3.12 and multiple OS
  • release.yml: Automated PyPI release workflow
  • pr-validation.yml: PR checks including linting, security, and coverage
  • dependency-update.yml: Weekly automated dependency updates
  • codeql.yml: Security vulnerability scanning

Documentation

  • Added SUPPORT.md with support guidelines

Testing Infrastructure

  • Created tests directory with basic test structure
  • Added pytest configuration
  • Set up coverage reporting

Benefits

  • Automated testing on all PRs
  • Consistent release process
  • Security vulnerability detection
  • Automated dependency management
  • Improved code quality checks

Testing

The workflows will activate on:

  • Push to main branch
  • Pull requests
  • Manual workflow dispatch
  • Scheduled runs (dependencies and security)

Please review and merge to enable these improvements.

- Add GitHub Actions workflows for CI/CD
  - Test workflow for multiple Python versions and OS
  - Release workflow for PyPI publishing
  - PR validation with linting and security checks
  - Automated dependency updates
  - CodeQL security analysis
- Add SUPPORT.md documentation
- Create tests directory with basic test structure
- Update .gitignore for test artifacts
- Standardize project structure
- Add comprehensive test suite with proper imports
- Create pytest configuration files
- Add coverage configuration
- Ensure tests can run successfully
- Focus on Python 3.13+ only
- Test on Linux and macOS only (remove Windows)
- Simplify PR validation workflow
- Remove unnecessary complex workflows
- Make linting non-blocking for now
- Add permissions block to all workflows
- Set minimal required permissions (contents: read)
- Add pull-requests: write for PR validation
- Fix CodeQL security warnings
@oscarvalenzuelab oscarvalenzuelab merged commit cd8882f into main Nov 4, 2025
7 checks passed
@oscarvalenzuelab oscarvalenzuelab deleted the standardize-workflows branch November 4, 2025 05:10
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2 participants