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Network analysis#13

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drelliche wants to merge 217 commits intocode_reviewfrom
network_analysis
Open

Network analysis#13
drelliche wants to merge 217 commits intocode_reviewfrom
network_analysis

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@drelliche
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This PR is to pull the most up-to-date version into an empty branch so that the code can be reviewed line by line.

Thank you so much to any potential reviewers!

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