From 5637a01fdb6e6ff5dbedba9cb4ec8f920ad8311d Mon Sep 17 00:00:00 2001 From: busyfingers Date: Wed, 28 Nov 2018 20:31:24 +0100 Subject: [PATCH 1/4] Add reverse complement feature and tests --- lib/fasta-parser.js | 44 ++++++++++++++++++++++++++++++++++++++++--- test/fasta-parser.js | 45 ++++++++++++++++++++++++++++++++++++++++++++ 2 files changed, 86 insertions(+), 3 deletions(-) diff --git a/lib/fasta-parser.js b/lib/fasta-parser.js index 9049626..0f4d984 100644 --- a/lib/fasta-parser.js +++ b/lib/fasta-parser.js @@ -30,6 +30,16 @@ // // { id: 'sequence2', // // seq: 'CAGTCCTACTGCATGCATGCATGCATGCATCGATGCATGTCGACTGCATGCATGC' } // +// To include the reverse compliment of the sequences, pass arguments to the parser: +// +// var parser = fasta(true) // Includes the reverse compliment for DNA sequences +// var parser = fasta(true, true) // Includes the reverse compliment for RNA sequences +// +// Example output: +// // { id: 'sequence1', +// // seq: 'ATGCACGTCACGTCAGTACTCGTCAGTAC', +// // rc: 'TACGTGCAGTGCAGTCATGAGCAGTCATG' } +// // For a more useful API, check the dependent module: // // [bionode-fasta](http://github.com/bionode/bionode-fasta) @@ -39,14 +49,18 @@ var split = require('split') var pumpify = require('pumpify') var BufferList = require('bl') -module.exports = function () { - return pumpify(split(), parser()) +module.exports = function (includeRevComp, isRna) { + includeRevComp = typeof (includeRevComp) === 'boolean' ? includeRevComp : false + isRna = typeof (isRna) === 'boolean' ? isRna : false + var bases = includeRevComp ? getBaseComplements(isRna) : false + return pumpify(split(), parser(bases)) } -function parser () { +function parser (bases) { var cacheBuf var openID = Buffer.from('{"id":"') var closeIDOpenSeq = Buffer.from('","seq":"') + var closeSeqOpenRevComp = Buffer.from('","rc":"') var closeSeq = Buffer.from('"}\n') var stream = through(transform, flush) @@ -70,6 +84,10 @@ function parser () { this.emit('error', {msg: 'Failed fasta parsing', buf: buf}) } else { cacheBuf.append(buf) + if (bases) { // If bases is thruthy then it contains a string with reference bases + cacheBuf.append(closeSeqOpenRevComp) + cacheBuf.append(getReverseCompliment(buf)) + } } } next() @@ -82,4 +100,24 @@ function parser () { } this.push(null) } + + function getReverseCompliment (buf) { + var seq = buf.toString() + var complement = Buffer.alloc(seq.length) + for (var i = 0; i < seq.length; i++) { + var baseIndex = bases.indexOf(seq[i]) + if (baseIndex > -1) { + // If the base was found in the base reference, pick the base 4 positions to the right, which is the complementary base + complement.write(bases[bases.indexOf(seq[i]) + 4], i) + } else { + // If no match was found (e.g. if specifying that a DNA sequence is RNA), set the complimentary base to 0 + complement.write('0', i) + } + } + return complement + } +} + +function getBaseComplements (isRna) { + return isRna ? 'AGCUUCGA' : 'ATGCTACG' } diff --git a/test/fasta-parser.js b/test/fasta-parser.js index 27144d7..86774d6 100644 --- a/test/fasta-parser.js +++ b/test/fasta-parser.js @@ -19,6 +19,12 @@ TCAAAGATTCGGAATGCTGTCTGGAGGGTGAATCTAACGGTGCGTATCTCGATTGCTCAGTCGCTTTTCGTACTGCGCGA AGTTCGTACCGCTCATTCACTTGGTTCCGAAGCCTGTCCTGATATATGAATCCAAACTAGAGCGGGGCTCTTGACATTTGG\n\ AGTTGTAAATATCTAATACTCCAATCGG\n`) +var fastaDataShortDNA = Buffer.from(`>contig1\n\ +TCACCAACTACGA\n`) + +var fastaDataShortRNA = Buffer.from(`>contig1\n\ +AGCUUCAAC\n`) + test('Should parse a FASTA Buffer to a JSON Buffer', function (t) { t.plan(1) var result = [] @@ -29,3 +35,42 @@ test('Should parse a FASTA Buffer to a JSON Buffer', function (t) { parser.write(fastaData) parser.end() }) + +test('Should include reverse compliment if specified', function (t) { + t.plan(1) + var result = [] + var parser = fasta(true) + parser + .on('data', function (data) { result.push(JSON.parse(data.toString())) }) + .on('end', function () { + t.deepEqual(result[0].rc, 'AGTGGTTGATGCT') + }) + parser.write(fastaDataShortDNA) + parser.end() +}) + +test('Should handle reverse complement of RNA sequences', function (t) { + t.plan(1) + var result = [] + var parser = fasta(true, true) + parser + .on('data', function (data) { result.push(JSON.parse(data.toString())) }) + .on('end', function () { + t.deepEqual(result[0].rc, 'UCGAAGUUG') + }) + parser.write(fastaDataShortRNA) + parser.end() +}) + +test('Should replace invalid bases with 0', function (t) { + t.plan(1) + var result = [] + var parser = fasta(true, true) + parser + .on('data', function (data) { result.push(JSON.parse(data.toString())) }) + .on('end', function () { + t.deepEqual(result[0].rc, '0GUGGUUG0UGCU') + }) + parser.write(fastaDataShortDNA) + parser.end() +}) From ce67c56a1a42a93bb4ead9e06aabf25c3f991841 Mon Sep 17 00:00:00 2001 From: busyfingers Date: Wed, 28 Nov 2018 20:31:46 +0100 Subject: [PATCH 2/4] Add minified js --- fasta-parser.min.js | 8 +++++--- 1 file changed, 5 insertions(+), 3 deletions(-) diff --git a/fasta-parser.min.js b/fasta-parser.min.js index 0202ab6..268d1f5 100644 --- a/fasta-parser.min.js +++ b/fasta-parser.min.js @@ -1,3 +1,5 @@ -require=function e(t,n,r){function s(o,u){if(!n[o]){if(!t[o]){var a=typeof require=="function"&&require;if(!u&&a)return a(o,!0);if(i)return i(o,!0);var f=new Error("Cannot find module '"+o+"'");throw f.code="MODULE_NOT_FOUND",f}var l=n[o]={exports:{}};t[o][0].call(l.exports,function(e){var n=t[o][1][e];return s(n?n:e)},l,l.exports,e,t,n,r)}return n[o].exports}var i=typeof require=="function"&&require;for(var o=0;o0?subject>>>0:0;else if(type==="string"){if(encoding==="base64")subject=base64clean(subject);length=Buffer.byteLength(subject,encoding)}else if(type==="object"&&subject!==null){if(subject.type==="Buffer"&&isArray(subject.data))subject=subject.data;length=+subject.length>0?Math.floor(+subject.length):0}else throw new Error("First argument needs to be a number, array or string.");var buf;if(TYPED_ARRAY_SUPPORT){buf=Buffer._augment(new Uint8Array(length))}else{buf=this;buf.length=length;buf._isBuffer=true}var i;if(TYPED_ARRAY_SUPPORT&&typeof subject.byteLength==="number"){buf._set(subject)}else if(isArrayish(subject)){if(Buffer.isBuffer(subject)){for(i=0;iremaining){length=remaining}}var strLen=string.length;assert(strLen%2===0,"Invalid hex string");if(length>strLen/2){length=strLen/2}for(var i=0;iremaining){length=remaining}}encoding=String(encoding||"utf8").toLowerCase();var ret;switch(encoding){case"hex":ret=hexWrite(this,string,offset,length);break;case"utf8":case"utf-8":ret=utf8Write(this,string,offset,length);break;case"ascii":ret=asciiWrite(this,string,offset,length);break;case"binary":ret=binaryWrite(this,string,offset,length);break;case"base64":ret=base64Write(this,string,offset,length);break;case"ucs2":case"ucs-2":case"utf16le":case"utf-16le":ret=utf16leWrite(this,string,offset,length);break;default:throw new Error("Unknown encoding")}return 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writeDouble(this,value,offset,false,noAssert)};Buffer.prototype.fill=function(value,start,end){if(!value)value=0;if(!start)start=0;if(!end)end=this.length;assert(end>=start,"end < start");if(end===start)return;if(this.length===0)return;assert(start>=0&&start=0&&end<=this.length,"end out of bounds");var i;if(typeof value==="number"){for(i=start;i"};Buffer.prototype.toArrayBuffer=function(){if(typeof Uint8Array!=="undefined"){if(TYPED_ARRAY_SUPPORT){return new Buffer(this).buffer}else{var buf=new Uint8Array(this.length);for(var i=0,len=buf.length;i=55296&&b<=57343)i++;var h=encodeURIComponent(str.slice(start,i+1)).substr(1).split("%");for(var j=0;j>8;lo=c%256;byteArray.push(lo);byteArray.push(hi)}return byteArray}function base64ToBytes(str){return base64.toByteArray(str)}function blitBuffer(src,dst,offset,length){for(var i=0;i=dst.length||i>=src.length)break;dst[i+offset]=src[i]}return i}function decodeUtf8Char(str){try{return decodeURIComponent(str)}catch(err){return String.fromCharCode(65533)}}function verifuint(value,max){assert(typeof value==="number","cannot write a non-number as a number");assert(value>=0,"specified a negative value for writing an unsigned value");assert(value<=max,"value is larger than maximum value for type");assert(Math.floor(value)===value,"value has a fractional component")}function verifsint(value,max,min){assert(typeof value==="number","cannot write a non-number as a number");assert(value<=max,"value larger than maximum allowed value");assert(value>=min,"value smaller than minimum allowed value");assert(Math.floor(value)===value,"value has a fractional component")}function verifIEEE754(value,max,min){assert(typeof value==="number","cannot write a non-number as a number");assert(value<=max,"value larger than maximum allowed value");assert(value>=min,"value smaller than minimum allowed value")}function assert(test,message){if(!test)throw new Error(message||"Failed assertion")}},{"base64-js":4,ieee754:5}],4:[function(require,module,exports){var lookup="ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789+/";(function(exports){"use strict";var Arr=typeof Uint8Array!=="undefined"?Uint8Array:Array;var PLUS="+".charCodeAt(0);var SLASH="/".charCodeAt(0);var NUMBER="0".charCodeAt(0);var LOWER="a".charCodeAt(0);var UPPER="A".charCodeAt(0);function decode(elt){var code=elt.charCodeAt(0);if(code===PLUS)return 62;if(code===SLASH)return 63;if(code0){throw new Error("Invalid string. Length must be a multiple of 4")}var len=b64.length;placeHolders="="===b64.charAt(len-2)?2:"="===b64.charAt(len-1)?1:0;arr=new Arr(b64.length*3/4-placeHolders);l=placeHolders>0?b64.length-4:b64.length;var L=0;function push(v){arr[L++]=v}for(i=0,j=0;i>16);push((tmp&65280)>>8);push(tmp&255)}if(placeHolders===2){tmp=decode(b64.charAt(i))<<2|decode(b64.charAt(i+1))>>4;push(tmp&255)}else if(placeHolders===1){tmp=decode(b64.charAt(i))<<10|decode(b64.charAt(i+1))<<4|decode(b64.charAt(i+2))>>2;push(tmp>>8&255);push(tmp&255)}return arr}function uint8ToBase64(uint8){var i,extraBytes=uint8.length%3,output="",temp,length;function encode(num){return lookup.charAt(num)}function tripletToBase64(num){return encode(num>>18&63)+encode(num>>12&63)+encode(num>>6&63)+encode(num&63)}for(i=0,length=uint8.length-extraBytes;i>2);output+=encode(temp<<4&63);output+="==";break;case 2:temp=(uint8[uint8.length-2]<<8)+uint8[uint8.length-1];output+=encode(temp>>10);output+=encode(temp>>4&63);output+=encode(temp<<2&63);output+="=";break}return output}exports.toByteArray=b64ToByteArray;exports.fromByteArray=uint8ToBase64})(typeof exports==="undefined"?this.base64js={}:exports)},{}],5:[function(require,module,exports){exports.read=function(buffer,offset,isLE,mLen,nBytes){var e,m,eLen=nBytes*8-mLen-1,eMax=(1<>1,nBits=-7,i=isLE?nBytes-1:0,d=isLE?-1:1,s=buffer[offset+i];i+=d;e=s&(1<<-nBits)-1;s>>=-nBits;nBits+=eLen;for(;nBits>0;e=e*256+buffer[offset+i],i+=d,nBits-=8);m=e&(1<<-nBits)-1;e>>=-nBits;nBits+=mLen;for(;nBits>0;m=m*256+buffer[offset+i],i+=d,nBits-=8);if(e===0){e=1-eBias}else if(e===eMax){return m?NaN:(s?-1:1)*Infinity}else{m=m+Math.pow(2,mLen);e=e-eBias}return(s?-1:1)*m*Math.pow(2,e-mLen)};exports.write=function(buffer,value,offset,isLE,mLen,nBytes){var e,m,c,eLen=nBytes*8-mLen-1,eMax=(1<>1,rt=mLen===23?Math.pow(2,-24)-Math.pow(2,-77):0,i=isLE?0:nBytes-1,d=isLE?1:-1,s=value<0||value===0&&1/value<0?1:0;value=Math.abs(value);if(isNaN(value)||value===Infinity){m=isNaN(value)?1:0;e=eMax}else{e=Math.floor(Math.log(value)/Math.LN2);if(value*(c=Math.pow(2,-e))<1){e--;c*=2}if(e+eBias>=1){value+=rt/c}else{value+=rt*Math.pow(2,1-eBias)}if(value*c>=2){e++;c/=2}if(e+eBias>=eMax){m=0;e=eMax}else if(e+eBias>=1){m=(value*c-1)*Math.pow(2,mLen);e=e+eBias}else{m=value*Math.pow(2,eBias-1)*Math.pow(2,mLen);e=0}}for(;mLen>=8;buffer[offset+i]=m&255,i+=d,m/=256,mLen-=8);e=e<0;buffer[offset+i]=e&255,i+=d,e/=256,eLen-=8);buffer[offset+i-d]|=s*128}},{}],6:[function(require,module,exports){function EventEmitter(){this._events=this._events||{};this._maxListeners=this._maxListeners||undefined}module.exports=EventEmitter;EventEmitter.EventEmitter=EventEmitter;EventEmitter.prototype._events=undefined;EventEmitter.prototype._maxListeners=undefined;EventEmitter.defaultMaxListeners=10;EventEmitter.prototype.setMaxListeners=function(n){if(!isNumber(n)||n<0||isNaN(n))throw TypeError("n must be a positive number");this._maxListeners=n;return this};EventEmitter.prototype.emit=function(type){var er,handler,len,args,i,listeners;if(!this._events)this._events={};if(type==="error"){if(!this._events.error||isObject(this._events.error)&&!this._events.error.length){er=arguments[1];if(er instanceof Error){throw er}else{throw TypeError('Uncaught, unspecified "error" event.')}return false}}handler=this._events[type];if(isUndefined(handler))return false;if(isFunction(handler)){switch(arguments.length){case 1:handler.call(this);break;case 2:handler.call(this,arguments[1]);break;case 3:handler.call(this,arguments[1],arguments[2]);break;default:len=arguments.length;args=new Array(len-1);for(i=1;i0&&this._events[type].length>m){this._events[type].warned=true;console.error("(node) warning: possible EventEmitter memory "+"leak detected. %d listeners added. "+"Use emitter.setMaxListeners() to increase limit.",this._events[type].length);if(typeof console.trace==="function"){console.trace()}}}return this};EventEmitter.prototype.on=EventEmitter.prototype.addListener;EventEmitter.prototype.once=function(type,listener){if(!isFunction(listener))throw TypeError("listener must be a function");var fired=false;function g(){this.removeListener(type,g);if(!fired){fired=true;listener.apply(this,arguments)}}g.listener=listener;this.on(type,g);return this};EventEmitter.prototype.removeListener=function(type,listener){var list,position,length,i;if(!isFunction(listener))throw TypeError("listener must be a function");if(!this._events||!this._events[type])return this;list=this._events[type];length=list.length;position=-1;if(list===listener||isFunction(list.listener)&&list.listener===listener){delete this._events[type];if(this._events.removeListener)this.emit("removeListener",type,listener)}else if(isObject(list)){for(i=length;i-->0;){if(list[i]===listener||list[i].listener&&list[i].listener===listener){position=i;break}}if(position<0)return this;if(list.length===1){list.length=0;delete this._events[type]}else{list.splice(position,1)}if(this._events.removeListener)this.emit("removeListener",type,listener)}return this};EventEmitter.prototype.removeAllListeners=function(type){var key,listeners;if(!this._events)return this;if(!this._events.removeListener){if(arguments.length===0)this._events={};else if(this._events[type])delete this._events[type];return this}if(arguments.length===0){for(key in this._events){if(key==="removeListener")continue;this.removeAllListeners(key)}this.removeAllListeners("removeListener");this._events={};return this}listeners=this._events[type];if(isFunction(listeners)){this.removeListener(type,listeners)}else{while(listeners.length)this.removeListener(type,listeners[listeners.length-1])}delete this._events[type];return this};EventEmitter.prototype.listeners=function(type){var ret;if(!this._events||!this._events[type])ret=[];else if(isFunction(this._events[type]))ret=[this._events[type]]; -else ret=this._events[type].slice();return ret};EventEmitter.listenerCount=function(emitter,type){var ret;if(!emitter._events||!emitter._events[type])ret=0;else if(isFunction(emitter._events[type]))ret=1;else ret=emitter._events[type].length;return ret};function isFunction(arg){return typeof arg==="function"}function isNumber(arg){return typeof arg==="number"}function isObject(arg){return typeof arg==="object"&&arg!==null}function isUndefined(arg){return arg===void 0}},{}],7:[function(require,module,exports){if(typeof Object.create==="function"){module.exports=function inherits(ctor,superCtor){ctor.super_=superCtor;ctor.prototype=Object.create(superCtor.prototype,{constructor:{value:ctor,enumerable:false,writable:true,configurable:true}})}}else{module.exports=function inherits(ctor,superCtor){ctor.super_=superCtor;var TempCtor=function(){};TempCtor.prototype=superCtor.prototype;ctor.prototype=new TempCtor;ctor.prototype.constructor=ctor}}},{}],8:[function(require,module,exports){module.exports=Array.isArray||function(arr){return Object.prototype.toString.call(arr)=="[object Array]"}},{}],9:[function(require,module,exports){var process=module.exports={};process.nextTick=function(){var canSetImmediate=typeof window!=="undefined"&&window.setImmediate;var canPost=typeof window!=="undefined"&&window.postMessage&&window.addEventListener;if(canSetImmediate){return function(f){return window.setImmediate(f)}}if(canPost){var queue=[];window.addEventListener("message",function(ev){var source=ev.source;if((source===window||source===null)&&ev.data==="process-tick"){ev.stopPropagation();if(queue.length>0){var fn=queue.shift();fn()}}},true);return function nextTick(fn){queue.push(fn);window.postMessage("process-tick","*")}}return function nextTick(fn){setTimeout(fn,0)}}();process.title="browser";process.browser=true;process.env={};process.argv=[];function noop(){}process.on=noop;process.addListener=noop;process.once=noop;process.off=noop;process.removeListener=noop;process.removeAllListeners=noop;process.emit=noop;process.binding=function(name){throw new Error("process.binding is not supported")};process.cwd=function(){return"/"};process.chdir=function(dir){throw new Error("process.chdir is not supported")}},{}],10:[function(require,module,exports){module.exports=require("./lib/_stream_duplex.js")},{"./lib/_stream_duplex.js":11}],11:[function(require,module,exports){(function(process){module.exports=Duplex;var objectKeys=Object.keys||function(obj){var keys=[];for(var key in obj)keys.push(key);return keys};var util=require("core-util-is");util.inherits=require("inherits");var Readable=require("./_stream_readable");var Writable=require("./_stream_writable");util.inherits(Duplex,Readable);forEach(objectKeys(Writable.prototype),function(method){if(!Duplex.prototype[method])Duplex.prototype[method]=Writable.prototype[method]});function Duplex(options){if(!(this instanceof Duplex))return new Duplex(options);Readable.call(this,options);Writable.call(this,options);if(options&&options.readable===false)this.readable=false;if(options&&options.writable===false)this.writable=false;this.allowHalfOpen=true;if(options&&options.allowHalfOpen===false)this.allowHalfOpen=false;this.once("end",onend)}function onend(){if(this.allowHalfOpen||this._writableState.ended)return;process.nextTick(this.end.bind(this))}function forEach(xs,f){for(var i=0,l=xs.length;i0){if(state.ended&&!addToFront){var e=new Error("stream.push() after EOF");stream.emit("error",e)}else if(state.endEmitted&&addToFront){var e=new Error("stream.unshift() after end event");stream.emit("error",e)}else{if(state.decoder&&!addToFront&&!encoding)chunk=state.decoder.write(chunk);state.length+=state.objectMode?1:chunk.length;if(addToFront){state.buffer.unshift(chunk)}else{state.reading=false;state.buffer.push(chunk)}if(state.needReadable)emitReadable(stream);maybeReadMore(stream,state)}}else if(!addToFront){state.reading=false}return needMoreData(state)}function needMoreData(state){return!state.ended&&(state.needReadable||state.length=MAX_HWM){n=MAX_HWM}else{n--;for(var p=1;p<32;p<<=1)n|=n>>p;n++}return n}function howMuchToRead(n,state){if(state.length===0&&state.ended)return 0;if(state.objectMode)return n===0?0:1;if(isNaN(n)||n===null){if(state.flowing&&state.buffer.length)return state.buffer[0].length;else return state.length}if(n<=0)return 0;if(n>state.highWaterMark)state.highWaterMark=roundUpToNextPowerOf2(n);if(n>state.length){if(!state.ended){state.needReadable=true;return 0}else return state.length}return n}Readable.prototype.read=function(n){var state=this._readableState;state.calledRead=true;var nOrig=n;if(typeof n!=="number"||n>0)state.emittedReadable=false;if(n===0&&state.needReadable&&(state.length>=state.highWaterMark||state.ended)){emitReadable(this);return null}n=howMuchToRead(n,state);if(n===0&&state.ended){if(state.length===0)endReadable(this);return null}var doRead=state.needReadable;if(state.length-n<=state.highWaterMark)doRead=true;if(state.ended||state.reading)doRead=false;if(doRead){state.reading=true;state.sync=true;if(state.length===0)state.needReadable=true;this._read(state.highWaterMark);state.sync=false}if(doRead&&!state.reading)n=howMuchToRead(nOrig,state);var ret;if(n>0)ret=fromList(n,state);else ret=null;if(ret===null){state.needReadable=true;n=0}state.length-=n;if(state.length===0&&!state.ended)state.needReadable=true;if(state.ended&&!state.endEmitted&&state.length===0)endReadable(this);return ret};function chunkInvalid(state,chunk){var er=null;if(!Buffer.isBuffer(chunk)&&"string"!==typeof chunk&&chunk!==null&&chunk!==undefined&&!state.objectMode&&!er){er=new TypeError("Invalid non-string/buffer chunk")}return er}function onEofChunk(stream,state){if(state.decoder&&!state.ended){var chunk=state.decoder.end();if(chunk&&chunk.length){state.buffer.push(chunk);state.length+=state.objectMode?1:chunk.length}}state.ended=true;if(state.length>0)emitReadable(stream);else endReadable(stream)}function emitReadable(stream){var state=stream._readableState;state.needReadable=false;if(state.emittedReadable)return;state.emittedReadable=true;if(state.sync)process.nextTick(function(){emitReadable_(stream)});else emitReadable_(stream)}function emitReadable_(stream){stream.emit("readable")}function maybeReadMore(stream,state){if(!state.readingMore){state.readingMore=true;process.nextTick(function(){maybeReadMore_(stream,state)})}}function maybeReadMore_(stream,state){var len=state.length;while(!state.reading&&!state.flowing&&!state.ended&&state.length0)return}if(state.pipesCount===0){state.flowing=false;if(EE.listenerCount(src,"data")>0)emitDataEvents(src);return}state.ranOut=true}function pipeOnReadable(){if(this._readableState.ranOut){this._readableState.ranOut=false;flow(this)}}Readable.prototype.unpipe=function(dest){var state=this._readableState;if(state.pipesCount===0)return this;if(state.pipesCount===1){if(dest&&dest!==state.pipes)return this;if(!dest)dest=state.pipes;state.pipes=null;state.pipesCount=0;this.removeListener("readable",pipeOnReadable);state.flowing=false;if(dest)dest.emit("unpipe",this);return this}if(!dest){var dests=state.pipes;var len=state.pipesCount;state.pipes=null;state.pipesCount=0;this.removeListener("readable",pipeOnReadable);state.flowing=false;for(var i=0;i=length){if(stringMode)ret=list.join("");else ret=Buffer.concat(list,length);list.length=0}else{if(n0)throw new Error("endReadable called on non-empty stream");if(!state.endEmitted&&state.calledRead){state.ended=true;process.nextTick(function(){if(!state.endEmitted&&state.length===0){state.endEmitted=true;stream.readable=false;stream.emit("end")}})}}function forEach(xs,f){for(var i=0,l=xs.length;i=this.charLength-this.charReceived?this.charLength-this.charReceived:buffer.length;buffer.copy(this.charBuffer,this.charReceived,offset,i);this.charReceived+=i-offset;offset=i;if(this.charReceived=55296&&charCode<=56319){this.charLength+=this.surrogateSize;charStr="";continue}this.charReceived=this.charLength=0;if(i==buffer.length)return charStr;buffer=buffer.slice(i,buffer.length);break}var lenIncomplete=this.detectIncompleteChar(buffer);var end=buffer.length;if(this.charLength){buffer.copy(this.charBuffer,0,buffer.length-lenIncomplete,end);this.charReceived=lenIncomplete;end-=lenIncomplete}charStr+=buffer.toString(this.encoding,0,end);var end=charStr.length-1;var charCode=charStr.charCodeAt(end);if(charCode>=55296&&charCode<=56319){var size=this.surrogateSize;this.charLength+=size;this.charReceived+=size;this.charBuffer.copy(this.charBuffer,size,0,size);this.charBuffer.write(charStr.charAt(charStr.length-1),this.encoding);return charStr.substring(0,end)}return charStr};StringDecoder.prototype.detectIncompleteChar=function(buffer){var i=buffer.length>=3?3:buffer.length;for(;i>0;i--){var c=buffer[buffer.length-i];if(i==1&&c>>5==6){this.charLength=2;break}if(i<=2&&c>>4==14){this.charLength=3;break}if(i<=3&&c>>3==30){this.charLength=4;break}}return i};StringDecoder.prototype.end=function(buffer){var res="";if(buffer&&buffer.length)res=this.write(buffer);if(this.charReceived){var cr=this.charReceived;var buf=this.charBuffer;var enc=this.encoding;res+=buf.slice(0,cr).toString(enc)}return res};function passThroughWrite(buffer){return buffer.toString(this.encoding)}function utf16DetectIncompleteChar(buffer){var incomplete=this.charReceived=buffer.length%2;this.charLength=incomplete?2:0;return incomplete}function base64DetectIncompleteChar(buffer){var incomplete=this.charReceived=buffer.length%3;this.charLength=incomplete?3:0;return incomplete}},{buffer:3}],18:[function(require,module,exports){module.exports=require("./lib/_stream_passthrough.js")},{"./lib/_stream_passthrough.js":12}],19:[function(require,module,exports){exports=module.exports=require("./lib/_stream_readable.js");exports.Readable=exports;exports.Writable=require("./lib/_stream_writable.js");exports.Duplex=require("./lib/_stream_duplex.js");exports.Transform=require("./lib/_stream_transform.js");exports.PassThrough=require("./lib/_stream_passthrough.js")},{"./lib/_stream_duplex.js":11,"./lib/_stream_passthrough.js":12,"./lib/_stream_readable.js":13,"./lib/_stream_transform.js":14,"./lib/_stream_writable.js":15}],20:[function(require,module,exports){module.exports=require("./lib/_stream_transform.js")},{"./lib/_stream_transform.js":14}],21:[function(require,module,exports){module.exports=require("./lib/_stream_writable.js")},{"./lib/_stream_writable.js":15}],22:[function(require,module,exports){module.exports=Stream;var EE=require("events").EventEmitter;var inherits=require("inherits");inherits(Stream,EE);Stream.Readable=require("readable-stream/readable.js");Stream.Writable=require("readable-stream/writable.js");Stream.Duplex=require("readable-stream/duplex.js");Stream.Transform=require("readable-stream/transform.js");Stream.PassThrough=require("readable-stream/passthrough.js");Stream.Stream=Stream;function Stream(){EE.call(this)}Stream.prototype.pipe=function(dest,options){var source=this;function ondata(chunk){if(dest.writable){if(false===dest.write(chunk)&&source.pause){source.pause()}}}source.on("data",ondata);function ondrain(){if(source.readable&&source.resume){source.resume()}}dest.on("drain",ondrain);if(!dest._isStdio&&(!options||options.end!==false)){source.on("end",onend);source.on("close",onclose)}var didOnEnd=false;function onend(){if(didOnEnd)return;didOnEnd=true;dest.end()}function onclose(){if(didOnEnd)return;didOnEnd=true;if(typeof dest.destroy==="function")dest.destroy()}function onerror(er){cleanup();if(EE.listenerCount(this,"error")===0){throw er}}source.on("error",onerror);dest.on("error",onerror);function cleanup(){source.removeListener("data",ondata);dest.removeListener("drain",ondrain);source.removeListener("end",onend);source.removeListener("close",onclose);source.removeListener("error",onerror);dest.removeListener("error",onerror);source.removeListener("end",cleanup);source.removeListener("close",cleanup);dest.removeListener("close",cleanup)}source.on("end",cleanup);source.on("close",cleanup);dest.on("close",cleanup);dest.emit("pipe",source);return dest}},{events:6,inherits:7,"readable-stream/duplex.js":10,"readable-stream/passthrough.js":18,"readable-stream/readable.js":19,"readable-stream/transform.js":20,"readable-stream/writable.js":21}],23:[function(require,module,exports){var Buffer=require("buffer").Buffer;function assertEncoding(encoding){if(encoding&&!Buffer.isEncoding(encoding)){throw new Error("Unknown encoding: "+encoding)}}var StringDecoder=exports.StringDecoder=function(encoding){this.encoding=(encoding||"utf8").toLowerCase().replace(/[-_]/,"");assertEncoding(encoding);switch(this.encoding){case"utf8":this.surrogateSize=3;break;case"ucs2":case"utf16le":this.surrogateSize=2; -this.detectIncompleteChar=utf16DetectIncompleteChar;break;case"base64":this.surrogateSize=3;this.detectIncompleteChar=base64DetectIncompleteChar;break;default:this.write=passThroughWrite;return}this.charBuffer=new Buffer(6);this.charReceived=0;this.charLength=0};StringDecoder.prototype.write=function(buffer){var charStr="";var offset=0;while(this.charLength){var i=buffer.length>=this.charLength-this.charReceived?this.charLength-this.charReceived:buffer.length;buffer.copy(this.charBuffer,this.charReceived,offset,i);this.charReceived+=i-offset;offset=i;if(this.charReceived=55296&&charCode<=56319){this.charLength+=this.surrogateSize;charStr="";continue}this.charReceived=this.charLength=0;if(i==buffer.length)return charStr;buffer=buffer.slice(i,buffer.length);break}var lenIncomplete=this.detectIncompleteChar(buffer);var end=buffer.length;if(this.charLength){buffer.copy(this.charBuffer,0,buffer.length-lenIncomplete,end);this.charReceived=lenIncomplete;end-=lenIncomplete}charStr+=buffer.toString(this.encoding,0,end);var end=charStr.length-1;var charCode=charStr.charCodeAt(end);if(charCode>=55296&&charCode<=56319){var size=this.surrogateSize;this.charLength+=size;this.charReceived+=size;this.charBuffer.copy(this.charBuffer,size,0,size);this.charBuffer.write(charStr.charAt(charStr.length-1),this.encoding);return charStr.substring(0,end)}return charStr};StringDecoder.prototype.detectIncompleteChar=function(buffer){var i=buffer.length>=3?3:buffer.length;for(;i>0;i--){var c=buffer[buffer.length-i];if(i==1&&c>>5==6){this.charLength=2;break}if(i<=2&&c>>4==14){this.charLength=3;break}if(i<=3&&c>>3==30){this.charLength=4;break}}return i};StringDecoder.prototype.end=function(buffer){var res="";if(buffer&&buffer.length)res=this.write(buffer);if(this.charReceived){var cr=this.charReceived;var buf=this.charBuffer;var enc=this.encoding;res+=buf.slice(0,cr).toString(enc)}return res};function passThroughWrite(buffer){return buffer.toString(this.encoding)}function utf16DetectIncompleteChar(buffer){var incomplete=this.charReceived=buffer.length%2;this.charLength=incomplete?2:0;return incomplete}function base64DetectIncompleteChar(buffer){var incomplete=this.charReceived=buffer.length%3;this.charLength=incomplete?3:0;return incomplete}},{buffer:3}],24:[function(require,module,exports){module.exports=function isBuffer(arg){return arg&&typeof arg==="object"&&typeof arg.copy==="function"&&typeof arg.fill==="function"&&typeof arg.readUInt8==="function"}},{}],25:[function(require,module,exports){(function(process,global){var formatRegExp=/%[sdj%]/g;exports.format=function(f){if(!isString(f)){var objects=[];for(var i=0;i=len)return x;switch(x){case"%s":return String(args[i++]);case"%d":return Number(args[i++]);case"%j":try{return JSON.stringify(args[i++])}catch(_){return"[Circular]"}default:return x}});for(var x=args[i];i=3)ctx.depth=arguments[2];if(arguments.length>=4)ctx.colors=arguments[3];if(isBoolean(opts)){ctx.showHidden=opts}else if(opts){exports._extend(ctx,opts)}if(isUndefined(ctx.showHidden))ctx.showHidden=false;if(isUndefined(ctx.depth))ctx.depth=2;if(isUndefined(ctx.colors))ctx.colors=false;if(isUndefined(ctx.customInspect))ctx.customInspect=true;if(ctx.colors)ctx.stylize=stylizeWithColor;return formatValue(ctx,obj,ctx.depth)}exports.inspect=inspect;inspect.colors={bold:[1,22],italic:[3,23],underline:[4,24],inverse:[7,27],white:[37,39],grey:[90,39],black:[30,39],blue:[34,39],cyan:[36,39],green:[32,39],magenta:[35,39],red:[31,39],yellow:[33,39]};inspect.styles={special:"cyan",number:"yellow","boolean":"yellow",undefined:"grey","null":"bold",string:"green",date:"magenta",regexp:"red"};function stylizeWithColor(str,styleType){var style=inspect.styles[styleType];if(style){return"["+inspect.colors[style][0]+"m"+str+"["+inspect.colors[style][1]+"m"}else{return str}}function stylizeNoColor(str,styleType){return str}function arrayToHash(array){var hash={};array.forEach(function(val,idx){hash[val]=true});return hash}function formatValue(ctx,value,recurseTimes){if(ctx.customInspect&&value&&isFunction(value.inspect)&&value.inspect!==exports.inspect&&!(value.constructor&&value.constructor.prototype===value)){var ret=value.inspect(recurseTimes,ctx);if(!isString(ret)){ret=formatValue(ctx,ret,recurseTimes)}return ret}var primitive=formatPrimitive(ctx,value);if(primitive){return primitive}var keys=Object.keys(value);var visibleKeys=arrayToHash(keys);if(ctx.showHidden){keys=Object.getOwnPropertyNames(value)}if(isError(value)&&(keys.indexOf("message")>=0||keys.indexOf("description")>=0)){return formatError(value)}if(keys.length===0){if(isFunction(value)){var name=value.name?": "+value.name:"";return ctx.stylize("[Function"+name+"]","special")}if(isRegExp(value)){return ctx.stylize(RegExp.prototype.toString.call(value),"regexp")}if(isDate(value)){return ctx.stylize(Date.prototype.toString.call(value),"date")}if(isError(value)){return formatError(value)}}var base="",array=false,braces=["{","}"];if(isArray(value)){array=true;braces=["[","]"]}if(isFunction(value)){var n=value.name?": "+value.name:"";base=" [Function"+n+"]"}if(isRegExp(value)){base=" "+RegExp.prototype.toString.call(value)}if(isDate(value)){base=" "+Date.prototype.toUTCString.call(value)}if(isError(value)){base=" "+formatError(value)}if(keys.length===0&&(!array||value.length==0)){return braces[0]+base+braces[1]}if(recurseTimes<0){if(isRegExp(value)){return ctx.stylize(RegExp.prototype.toString.call(value),"regexp")}else{return ctx.stylize("[Object]","special")}}ctx.seen.push(value);var output;if(array){output=formatArray(ctx,value,recurseTimes,visibleKeys,keys)}else{output=keys.map(function(key){return formatProperty(ctx,value,recurseTimes,visibleKeys,key,array)})}ctx.seen.pop();return reduceToSingleString(output,base,braces)}function formatPrimitive(ctx,value){if(isUndefined(value))return ctx.stylize("undefined","undefined");if(isString(value)){var simple="'"+JSON.stringify(value).replace(/^"|"$/g,"").replace(/'/g,"\\'").replace(/\\"/g,'"')+"'";return ctx.stylize(simple,"string")}if(isNumber(value))return ctx.stylize(""+value,"number");if(isBoolean(value))return ctx.stylize(""+value,"boolean");if(isNull(value))return ctx.stylize("null","null")}function formatError(value){return"["+Error.prototype.toString.call(value)+"]"}function formatArray(ctx,value,recurseTimes,visibleKeys,keys){var output=[];for(var i=0,l=value.length;i-1){if(array){str=str.split("\n").map(function(line){return" "+line}).join("\n").substr(2)}else{str="\n"+str.split("\n").map(function(line){return" "+line}).join("\n")}}}else{str=ctx.stylize("[Circular]","special")}}if(isUndefined(name)){if(array&&key.match(/^\d+$/)){return str}name=JSON.stringify(""+key);if(name.match(/^"([a-zA-Z_][a-zA-Z_0-9]*)"$/)){name=name.substr(1,name.length-2);name=ctx.stylize(name,"name")}else{name=name.replace(/'/g,"\\'").replace(/\\"/g,'"').replace(/(^"|"$)/g,"'");name=ctx.stylize(name,"string")}}return name+": "+str}function reduceToSingleString(output,base,braces){var numLinesEst=0;var length=output.reduce(function(prev,cur){numLinesEst++;if(cur.indexOf("\n")>=0)numLinesEst++;return prev+cur.replace(/\u001b\[\d\d?m/g,"").length+1},0);if(length>60){return braces[0]+(base===""?"":base+"\n ")+" "+output.join(",\n ")+" "+braces[1]}return braces[0]+base+" "+output.join(", ")+" "+braces[1]}function isArray(ar){return Array.isArray(ar)}exports.isArray=isArray;function isBoolean(arg){return typeof arg==="boolean"}exports.isBoolean=isBoolean;function isNull(arg){return arg===null}exports.isNull=isNull;function isNullOrUndefined(arg){return arg==null}exports.isNullOrUndefined=isNullOrUndefined;function isNumber(arg){return typeof arg==="number"}exports.isNumber=isNumber;function isString(arg){return typeof arg==="string"}exports.isString=isString;function isSymbol(arg){return typeof arg==="symbol"}exports.isSymbol=isSymbol;function isUndefined(arg){return arg===void 0}exports.isUndefined=isUndefined;function isRegExp(re){return isObject(re)&&objectToString(re)==="[object RegExp]"}exports.isRegExp=isRegExp;function isObject(arg){return typeof arg==="object"&&arg!==null}exports.isObject=isObject;function isDate(d){return isObject(d)&&objectToString(d)==="[object Date]"}exports.isDate=isDate;function isError(e){return isObject(e)&&(objectToString(e)==="[object Error]"||e instanceof Error)}exports.isError=isError;function isFunction(arg){return typeof arg==="function"}exports.isFunction=isFunction;function isPrimitive(arg){return arg===null||typeof arg==="boolean"||typeof arg==="number"||typeof arg==="string"||typeof arg==="symbol"||typeof arg==="undefined"}exports.isPrimitive=isPrimitive;exports.isBuffer=require("./support/isBuffer");function objectToString(o){return Object.prototype.toString.call(o)}function pad(n){return n<10?"0"+n.toString(10):n.toString(10)}var months=["Jan","Feb","Mar","Apr","May","Jun","Jul","Aug","Sep","Oct","Nov","Dec"];function timestamp(){var d=new Date;var time=[pad(d.getHours()),pad(d.getMinutes()),pad(d.getSeconds())].join(":");return[d.getDate(),months[d.getMonth()],time].join(" ")}exports.log=function(){console.log("%s - %s",timestamp(),exports.format.apply(exports,arguments))};exports.inherits=require("inherits");exports._extend=function(origin,add){if(!add||!isObject(add))return origin;var keys=Object.keys(add);var i=keys.length;while(i--){origin[keys[i]]=add[keys[i]]}return origin};function hasOwnProperty(obj,prop){return Object.prototype.hasOwnProperty.call(obj,prop)}}).call(this,require("_process"),typeof global!=="undefined"?global:typeof self!=="undefined"?self:typeof window!=="undefined"?window:{})},{"./support/isBuffer":24,_process:9,inherits:7}],26:[function(require,module,exports){var pump=require("pump");var util=require("util");var Duplexify=require("duplexify");var toArray=function(arguments){if(!arguments.length)return[];return Array.isArray(arguments[0])?arguments[0]:Array.prototype.slice.call(arguments)};var define=function(opts){var Pumpify=function(){var streams=toArray(arguments);if(!(this instanceof Pumpify))return new Pumpify(streams);Duplexify.call(this,null,null,opts);if(streams.length)this.setPipeline(streams)};util.inherits(Pumpify,Duplexify);Pumpify.prototype.setPipeline=function(){var streams=toArray(arguments);var self=this;var ended=false;var w=streams[0];var r=streams[streams.length-1];r=r.readable?r:null;w=w.writable?w:null;var onclose=function(){streams[0].emit("error",new Error("stream was destroyed"))};this.on("close",onclose);this.on("prefinish",function(){if(!ended)self.cork()});pump(streams,function(err){self.removeListener("close",onclose);if(err)return self.destroy(err);ended=true;self.uncork()});if(this.destroyed)return onclose();this.setWritable(w);this.setReadable(r)};return Pumpify};module.exports=define({destroy:false});module.exports.obj=define({destroy:false,objectMode:true,highWaterMark:16})},{duplexify:27,pump:30,util:25}],27:[function(require,module,exports){(function(process,Buffer){var stream=require("stream");var eos=require("end-of-stream");var util=require("util");var SIGNAL_FLUSH=new Buffer([0]);var onuncork=function(self,fn){if(self._corked)self.once("uncork",fn);else fn()};var destroyer=function(self){return function(err){if(err)self.destroy(err.message==="premature close"?null:err)}};var end=function(ws,fn){if(!ws)return fn();if(ws._writableState)return ws.end(fn);ws.end();fn()};var toStreams2=function(rs){return new stream.Readable({objectMode:true,highWaterMark:16}).wrap(rs)};var Duplexify=function(writable,readable,opts){if(!(this instanceof Duplexify))return new Duplexify(writable,readable,opts);stream.Duplex.call(this,opts);this._writable=null;this._readable=null;this._readable2=null;this._forwardDestroy=!opts||opts.destroy!==false;this._corked=1;this._ondrain=null;this._drained=false;this._forwarding=false;this._unwrite=null;this._unread=null;this.destroyed=false;if(writable)this.setWritable(writable);if(readable)this.setReadable(readable)};util.inherits(Duplexify,stream.Duplex);Duplexify.obj=function(writable,readable,opts){if(!opts)opts={};opts.objectMode=true;opts.highWaterMark=16;return new Duplexify(writable,readable,opts)};Duplexify.prototype.cork=function(){if(++this._corked===1)this.emit("cork")};Duplexify.prototype.uncork=function(){if(this._corked&&--this._corked===0)this.emit("uncork")};Duplexify.prototype.setWritable=function(writable){if(this._unwrite)this._unwrite();if(this.destroyed){if(writable&&writable.destroy)writable.destroy();return}if(writable===null||writable===false){this.end();return}var self=this;var unend=eos(writable,{writable:true,readable:false},destroyer(this));var ondrain=function(){var ondrain=self._ondrain;self._ondrain=null;if(ondrain)ondrain()};var clear=function(){self._writable.removeListener("drain",ondrain);unend()};if(this._unwrite)process.nextTick(ondrain);this._writable=writable;this._writable.on("drain",ondrain);this._unwrite=clear;this.uncork()};Duplexify.prototype.setReadable=function(readable){if(this._unread)this._unread();if(this.destroyed){if(readable&&readable.destroy)readable.destroy();return}if(readable===null||readable===false){this.push(null);return}var self=this;var unend=eos(readable,{writable:false,readable:true},destroyer(this));var onreadable=function(){self._forward()};var onend=function(){self.push(null)};var clear=function(){self._readable2.removeListener("readable",onreadable);self._readable2.removeListener("end",onend);unend()};this._drained=true;this._readable=readable;this._readable2=readable._readableState?readable:toStreams2(readable);this._readable2.on("readable",onreadable);this._readable2.on("end",onend);this._unread=clear;this._forward()};Duplexify.prototype._read=function(){this._drained=true;this._forward()};Duplexify.prototype._forward=function(){if(this._forwarding||!this._readable2||!this._drained)return;this._forwarding=true;var data;while((data=this._readable2.read())!==null){this._drained=this.push(data)}this._forwarding=false};Duplexify.prototype.destroy=function(err){if(this.destroyed)return;this.destroyed=true;var self=this;process.nextTick(function(){self._destroy(err)})};Duplexify.prototype._destroy=function(err){if(err){var ondrain=this._ondrain;this._ondrain=null;if(ondrain)ondrain(err);else this.emit("error",err)}if(this._forwardDestroy){if(this._readable&&this._readable.destroy)this._readable.destroy();if(this._writable&&this._writable.destroy)this._writable.destroy()}this.emit("close")};Duplexify.prototype._write=function(data,enc,cb){if(this.destroyed)return cb();if(this._corked)return onuncork(this,this._write.bind(this,data,enc,cb));if(data===SIGNAL_FLUSH)return this._finish(cb);if(!this._writable)return cb();if(this._writable.write(data)===false)this._ondrain=cb;else cb()};Duplexify.prototype._finish=function(cb){var self=this;this.emit("preend");onuncork(this,function(){end(self._writable,function(){self.emit("prefinish");onuncork(self,cb)})})};Duplexify.prototype.end=function(data,enc,cb){if(typeof data==="function")return this.end(null,null,data);if(typeof enc==="function")return this.end(data,null,enc);if(data)this.write(data);if(!this._writableState.ending)this.write(SIGNAL_FLUSH);return stream.Writable.prototype.end.call(this,cb)};module.exports=Duplexify}).call(this,require("_process"),require("buffer").Buffer)},{_process:9,buffer:3,"end-of-stream":28,stream:22,util:25}],28:[function(require,module,exports){var once=require("once");var noop=function(){};var isRequest=function(stream){return stream.setHeader&&typeof stream.abort==="function"};var eos=function(stream,opts,callback){if(typeof opts==="function")return eos(stream,null,opts);if(!opts)opts={};callback=once(callback||noop);var ws=stream._writableState;var rs=stream._readableState;var readable=opts.readable||opts.readable!==false&&stream.readable;var writable=opts.writable||opts.writable!==false&&stream.writable;var onlegacyfinish=function(){if(!stream.writable)onfinish()};var onfinish=function(){writable=false;if(!readable)callback()};var onend=function(){readable=false;if(!writable)callback()};var onclose=function(){if(readable&&!(rs&&rs.ended))return callback(new Error("premature close"));if(writable&&!(ws&&ws.ended))return callback(new Error("premature close"))};var onrequest=function(){stream.req.on("finish",onfinish)};if(isRequest(stream)){stream.on("complete",onfinish);stream.on("abort",onclose);if(stream.req)onrequest();else stream.on("request",onrequest)}else if(writable&&!ws){stream.on("end",onlegacyfinish);stream.on("close",onlegacyfinish)}stream.on("end",onend);stream.on("finish",onfinish);if(opts.error!==false)stream.on("error",callback);stream.on("close",onclose);return function(){stream.removeListener("complete",onfinish);stream.removeListener("abort",onclose);stream.removeListener("request",onrequest);if(stream.req)stream.req.removeListener("finish",onfinish);stream.removeListener("end",onlegacyfinish);stream.removeListener("close",onlegacyfinish);stream.removeListener("finish",onfinish);stream.removeListener("end",onend);stream.removeListener("error",callback);stream.removeListener("close",onclose)}};module.exports=eos},{once:29}],29:[function(require,module,exports){module.exports=once;once.proto=once(function(){Object.defineProperty(Function.prototype,"once",{value:function(){return once(this)},configurable:true})});function once(fn){var f=function(){if(f.called)return f.value;f.called=true;return f.value=fn.apply(this,arguments)};f.called=false;return f}},{}],30:[function(require,module,exports){var once=require("once");var eos=require("end-of-stream");var fs=require("fs");var noop=function(){};var isFn=function(fn){return typeof fn==="function"};var isFS=function(stream){return(stream instanceof(fs.ReadStream||noop)||stream instanceof(fs.WriteStream||noop))&&isFn(stream.close)};var isRequest=function(stream){return stream.setHeader&&isFn(stream.abort)};var destroyer=function(stream,reading,writing,callback){callback=once(callback);var closed=false;stream.on("close",function(){closed=true});eos(stream,{readable:reading,writable:writing},function(err){if(err)return callback(err);closed=true;callback()});var destroyed=false;return function(err){if(closed)return;if(destroyed)return;destroyed=true;if(isFS(stream))return stream.close();if(isRequest(stream))return stream.abort();if(isFn(stream.destroy))return stream.destroy();callback(err||new Error("stream was destroyed"))}};var call=function(fn){fn()};var pipe=function(from,to){return from.pipe(to)};var pump=function(){var streams=Array.prototype.slice.call(arguments);var callback=isFn(streams[streams.length-1]||noop)&&streams.pop()||noop;if(Array.isArray(streams[0]))streams=streams[0];if(streams.length<2)throw new Error("pump requires two streams per minimum");var error;var destroys=streams.map(function(stream,i){var reading=i0;return destroyer(stream,reading,writing,function(err){if(!error)error=err;if(err)destroys.forEach(call);if(reading)return;destroys.forEach(call);callback(error)})});return streams.reduce(pipe)};module.exports=pump},{"end-of-stream":31,fs:2,once:33}],31:[function(require,module,exports){module.exports=require(28)},{once:32}],32:[function(require,module,exports){module.exports=require(29)},{}],33:[function(require,module,exports){module.exports=once;once.proto=once(function(){Object.defineProperty(Function.prototype,"once",{value:function(){return once(this)},configurable:true})});function once(fn){var f=function(){if(f.called)return;f.called=true;return fn.apply(this,arguments)};f.called=false;return f}},{}],34:[function(require,module,exports){var through=require("through");var Decoder=require("string_decoder").StringDecoder;module.exports=split;function split(matcher,mapper,options){var decoder=new Decoder;var soFar="";var maxLength=options&&options.maxLength;if("function"===typeof matcher)mapper=matcher,matcher=null;if(!matcher)matcher=/\r?\n/;function emit(stream,piece){if(mapper){try{piece=mapper(piece)}catch(err){return stream.emit("error",err)}if("undefined"!==typeof piece)stream.queue(piece)}else stream.queue(piece)}function next(stream,buffer){var pieces=(soFar+buffer).split(matcher);soFar=pieces.pop();if(maxLength&&soFar.length>maxLength)stream.emit("error",new Error("maximum buffer reached"));for(var i=0;i-1){complement.write(bases[bases.indexOf(seq[i])+4],i)}else{complement.write("0",i)}}return complement}}function getBaseComplements(isRna){return isRna?"AGCUUCGA":"ATGCTACG"}}).call(this,require("buffer").Buffer)},{bl:3,buffer:6,pumpify:19,split:34,through2:39}],2:[function(require,module,exports){"use strict";exports.byteLength=byteLength;exports.toByteArray=toByteArray;exports.fromByteArray=fromByteArray;var lookup=[];var revLookup=[];var Arr=typeof Uint8Array!=="undefined"?Uint8Array:Array;var code="ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789+/";for(var i=0,len=code.length;i0){throw new Error("Invalid string. Length must be a multiple of 4")}var validLen=b64.indexOf("=");if(validLen===-1)validLen=len;var placeHoldersLen=validLen===len?0:4-validLen%4;return[validLen,placeHoldersLen]}function byteLength(b64){var lens=getLens(b64);var validLen=lens[0];var placeHoldersLen=lens[1];return(validLen+placeHoldersLen)*3/4-placeHoldersLen}function _byteLength(b64,validLen,placeHoldersLen){return(validLen+placeHoldersLen)*3/4-placeHoldersLen}function toByteArray(b64){var tmp;var lens=getLens(b64);var validLen=lens[0];var placeHoldersLen=lens[1];var arr=new Arr(_byteLength(b64,validLen,placeHoldersLen));var curByte=0;var len=placeHoldersLen>0?validLen-4:validLen;for(var i=0;i>16&255;arr[curByte++]=tmp>>8&255;arr[curByte++]=tmp&255}if(placeHoldersLen===2){tmp=revLookup[b64.charCodeAt(i)]<<2|revLookup[b64.charCodeAt(i+1)]>>4;arr[curByte++]=tmp&255}if(placeHoldersLen===1){tmp=revLookup[b64.charCodeAt(i)]<<10|revLookup[b64.charCodeAt(i+1)]<<4|revLookup[b64.charCodeAt(i+2)]>>2;arr[curByte++]=tmp>>8&255;arr[curByte++]=tmp&255}return arr}function tripletToBase64(num){return lookup[num>>18&63]+lookup[num>>12&63]+lookup[num>>6&63]+lookup[num&63]}function encodeChunk(uint8,start,end){var tmp;var output=[];for(var i=start;ilen2?len2:i+maxChunkLength))}if(extraBytes===1){tmp=uint8[len-1];parts.push(lookup[tmp>>2]+lookup[tmp<<4&63]+"==")}else if(extraBytes===2){tmp=(uint8[len-2]<<8)+uint8[len-1];parts.push(lookup[tmp>>10]+lookup[tmp>>4&63]+lookup[tmp<<2&63]+"=")}return parts.join("")}},{}],3:[function(require,module,exports){var DuplexStream=require("readable-stream/duplex"),util=require("util"),Buffer=require("safe-buffer").Buffer;function BufferList(callback){if(!(this instanceof BufferList))return new BufferList(callback);this._bufs=[];this.length=0;if(typeof callback=="function"){this._callback=callback;var piper=function piper(err){if(this._callback){this._callback(err);this._callback=null}}.bind(this);this.on("pipe",function onPipe(src){src.on("error",piper)});this.on("unpipe",function onUnpipe(src){src.removeListener("error",piper)})}else{this.append(callback)}DuplexStream.call(this)}util.inherits(BufferList,DuplexStream);BufferList.prototype._offset=function _offset(offset){var tot=0,i=0,_t;if(offset===0)return[0,0];for(;ithis.length)srcEnd=this.length;if(srcStart>=this.length)return dst||Buffer.alloc(0);if(srcEnd<=0)return dst||Buffer.alloc(0);var copy=!!dst,off=this._offset(srcStart),len=srcEnd-srcStart,bytes=len,bufoff=copy&&dstStart||0,start=off[1],l,i;if(srcStart===0&&srcEnd==this.length){if(!copy){return this._bufs.length===1?this._bufs[0]:Buffer.concat(this._bufs,this.length)}for(i=0;il){this._bufs[i].copy(dst,bufoff,start)}else{this._bufs[i].copy(dst,bufoff,start,start+bytes);break}bufoff+=l;bytes-=l;if(start)start=0}return dst};BufferList.prototype.shallowSlice=function shallowSlice(start,end){start=start||0;end=end||this.length;if(start<0)start+=this.length;if(end<0)end+=this.length;var startOffset=this._offset(start),endOffset=this._offset(end),buffers=this._bufs.slice(startOffset[0],endOffset[0]+1);if(endOffset[1]==0)buffers.pop();else buffers[buffers.length-1]=buffers[buffers.length-1].slice(0,endOffset[1]);if(startOffset[1]!=0)buffers[0]=buffers[0].slice(startOffset[1]);return new BufferList(buffers)};BufferList.prototype.toString=function toString(encoding,start,end){return this.slice(start,end).toString(encoding)};BufferList.prototype.consume=function consume(bytes){while(this._bufs.length){if(bytes>=this._bufs[0].length){bytes-=this._bufs[0].length;this.length-=this._bufs[0].length;this._bufs.shift()}else{this._bufs[0]=this._bufs[0].slice(bytes);this.length-=bytes;break}}return this};BufferList.prototype.duplicate=function duplicate(){var i=0,copy=new BufferList;for(;i>5===6)return 2;else if(byte>>4===14)return 3;else if(byte>>3===30)return 4;return-1}function utf8CheckIncomplete(self,buf,i){var j=buf.length-1;if(j=0){if(nb>0)self.lastNeed=nb-1;return nb}if(--j=0){if(nb>0)self.lastNeed=nb-2;return nb}if(--j=0){if(nb>0){if(nb===2)nb=0;else self.lastNeed=nb-3}return nb}return 0}function utf8CheckExtraBytes(self,buf,p){if((buf[0]&192)!==128){self.lastNeed=0;return"�".repeat(p)}if(self.lastNeed>1&&buf.length>1){if((buf[1]&192)!==128){self.lastNeed=1;return"�".repeat(p+1)}if(self.lastNeed>2&&buf.length>2){if((buf[2]&192)!==128){self.lastNeed=2;return"�".repeat(p+2)}}}}function utf8FillLast(buf){var p=this.lastTotal-this.lastNeed;var r=utf8CheckExtraBytes(this,buf,p);if(r!==undefined)return r;if(this.lastNeed<=buf.length){buf.copy(this.lastChar,p,0,this.lastNeed);return this.lastChar.toString(this.encoding,0,this.lastTotal)}buf.copy(this.lastChar,p,0,buf.length);this.lastNeed-=buf.length}function utf8Text(buf,i){var total=utf8CheckIncomplete(this,buf,i);if(!this.lastNeed)return buf.toString("utf8",i);this.lastTotal=total;var end=buf.length-(total-this.lastNeed);buf.copy(this.lastChar,0,end);return buf.toString("utf8",i,end)}function utf8End(buf){var r=buf&&buf.length?this.write(buf):"";if(this.lastNeed)return r+"�".repeat(this.lastTotal-this.lastNeed);return r}function utf16Text(buf,i){if((buf.length-i)%2===0){var r=buf.toString("utf16le",i);if(r){var c=r.charCodeAt(r.length-1);if(c>=55296&&c<=56319){this.lastNeed=2;this.lastTotal=4;this.lastChar[0]=buf[buf.length-2];this.lastChar[1]=buf[buf.length-1];return r.slice(0,-1)}}return r}this.lastNeed=1;this.lastTotal=2;this.lastChar[0]=buf[buf.length-1];return buf.toString("utf16le",i,buf.length-1)}function utf16End(buf){var r=buf&&buf.length?this.write(buf):"";if(this.lastNeed){var end=this.lastTotal-this.lastNeed;return r+this.lastChar.toString("utf16le",0,end)}return r}function base64Text(buf,i){var n=(buf.length-i)%3;if(n===0)return buf.toString("base64",i);this.lastNeed=3-n;this.lastTotal=3;if(n===1){this.lastChar[0]=buf[buf.length-1]}else{this.lastChar[0]=buf[buf.length-2];this.lastChar[1]=buf[buf.length-1]}return buf.toString("base64",i,buf.length-n)}function base64End(buf){var r=buf&&buf.length?this.write(buf):"";if(this.lastNeed)return r+this.lastChar.toString("base64",0,3-this.lastNeed);return r}function simpleWrite(buf){return buf.toString(this.encoding)}function simpleEnd(buf){return buf&&buf.length?this.write(buf):""}},{"safe-buffer":33}],6:[function(require,module,exports){"use strict";var base64=require("base64-js");var ieee754=require("ieee754");exports.Buffer=Buffer;exports.SlowBuffer=SlowBuffer;exports.INSPECT_MAX_BYTES=50;var K_MAX_LENGTH=2147483647;exports.kMaxLength=K_MAX_LENGTH;Buffer.TYPED_ARRAY_SUPPORT=typedArraySupport();if(!Buffer.TYPED_ARRAY_SUPPORT&&typeof console!=="undefined"&&typeof console.error==="function"){console.error("This browser lacks typed array (Uint8Array) support which is required by "+"`buffer` v5.x. Use `buffer` v4.x if you require old browser support.")}function typedArraySupport(){try{var arr=new Uint8Array(1);arr.__proto__={__proto__:Uint8Array.prototype,foo:function(){return 42}};return arr.foo()===42}catch(e){return false}}Object.defineProperty(Buffer.prototype,"parent",{enumerable:true,get:function(){if(!Buffer.isBuffer(this))return undefined;return this.buffer}});Object.defineProperty(Buffer.prototype,"offset",{enumerable:true,get:function(){if(!Buffer.isBuffer(this))return undefined;return this.byteOffset}});function createBuffer(length){if(length>K_MAX_LENGTH){throw new RangeError('The value "'+length+'" is invalid for option "size"')}var buf=new Uint8Array(length);buf.__proto__=Buffer.prototype;return buf}function Buffer(arg,encodingOrOffset,length){if(typeof arg==="number"){if(typeof encodingOrOffset==="string"){throw new TypeError('The "string" argument must be of type string. Received type number')}return allocUnsafe(arg)}return from(arg,encodingOrOffset,length)}if(typeof Symbol!=="undefined"&&Symbol.species!=null&&Buffer[Symbol.species]===Buffer){Object.defineProperty(Buffer,Symbol.species,{value:null,configurable:true,enumerable:false,writable:false})}Buffer.poolSize=8192;function from(value,encodingOrOffset,length){if(typeof value==="string"){return fromString(value,encodingOrOffset)}if(ArrayBuffer.isView(value)){return fromArrayLike(value)}if(value==null){throw TypeError("The first argument must be one of type string, Buffer, ArrayBuffer, Array, "+"or Array-like Object. Received type "+typeof value)}if(isInstance(value,ArrayBuffer)||value&&isInstance(value.buffer,ArrayBuffer)){return fromArrayBuffer(value,encodingOrOffset,length)}if(typeof value==="number"){throw new TypeError('The "value" argument must not be of type number. Received type number')}var valueOf=value.valueOf&&value.valueOf();if(valueOf!=null&&valueOf!==value){return Buffer.from(valueOf,encodingOrOffset,length)}var b=fromObject(value);if(b)return b;if(typeof Symbol!=="undefined"&&Symbol.toPrimitive!=null&&typeof value[Symbol.toPrimitive]==="function"){return Buffer.from(value[Symbol.toPrimitive]("string"),encodingOrOffset,length)}throw new TypeError("The first argument must be one of type string, Buffer, ArrayBuffer, Array, "+"or Array-like Object. Received type "+typeof value)}Buffer.from=function(value,encodingOrOffset,length){return from(value,encodingOrOffset,length)};Buffer.prototype.__proto__=Uint8Array.prototype;Buffer.__proto__=Uint8Array;function assertSize(size){if(typeof size!=="number"){throw new TypeError('"size" argument must be of type number')}else if(size<0){throw new RangeError('The value "'+size+'" is invalid for option "size"')}}function alloc(size,fill,encoding){assertSize(size);if(size<=0){return createBuffer(size)}if(fill!==undefined){return typeof encoding==="string"?createBuffer(size).fill(fill,encoding):createBuffer(size).fill(fill)}return createBuffer(size)}Buffer.alloc=function(size,fill,encoding){return alloc(size,fill,encoding)};function allocUnsafe(size){assertSize(size);return createBuffer(size<0?0:checked(size)|0)}Buffer.allocUnsafe=function(size){return allocUnsafe(size)};Buffer.allocUnsafeSlow=function(size){return allocUnsafe(size)};function fromString(string,encoding){if(typeof encoding!=="string"||encoding===""){encoding="utf8"}if(!Buffer.isEncoding(encoding)){throw new TypeError("Unknown encoding: "+encoding)}var length=byteLength(string,encoding)|0;var buf=createBuffer(length);var actual=buf.write(string,encoding);if(actual!==length){buf=buf.slice(0,actual)}return buf}function fromArrayLike(array){var length=array.length<0?0:checked(array.length)|0;var buf=createBuffer(length);for(var i=0;i=K_MAX_LENGTH){throw new RangeError("Attempt to allocate Buffer larger than maximum "+"size: 0x"+K_MAX_LENGTH.toString(16)+" bytes")}return length|0}function SlowBuffer(length){if(+length!=length){length=0}return Buffer.alloc(+length)}Buffer.isBuffer=function isBuffer(b){return b!=null&&b._isBuffer===true&&b!==Buffer.prototype};Buffer.compare=function compare(a,b){if(isInstance(a,Uint8Array))a=Buffer.from(a,a.offset,a.byteLength);if(isInstance(b,Uint8Array))b=Buffer.from(b,b.offset,b.byteLength);if(!Buffer.isBuffer(a)||!Buffer.isBuffer(b)){throw new TypeError('The "buf1", "buf2" arguments must be one of type Buffer or Uint8Array')}if(a===b)return 0;var x=a.length;var y=b.length;for(var i=0,len=Math.min(x,y);i2&&arguments[2]===true;if(!mustMatch&&len===0)return 0;var loweredCase=false;for(;;){switch(encoding){case"ascii":case"latin1":case"binary":return len;case"utf8":case"utf-8":return utf8ToBytes(string).length;case"ucs2":case"ucs-2":case"utf16le":case"utf-16le":return len*2;case"hex":return len>>>1;case"base64":return base64ToBytes(string).length;default:if(loweredCase){return mustMatch?-1:utf8ToBytes(string).length}encoding=(""+encoding).toLowerCase();loweredCase=true}}}Buffer.byteLength=byteLength;function slowToString(encoding,start,end){var loweredCase=false;if(start===undefined||start<0){start=0}if(start>this.length){return""}if(end===undefined||end>this.length){end=this.length}if(end<=0){return""}end>>>=0;start>>>=0;if(end<=start){return""}if(!encoding)encoding="utf8";while(true){switch(encoding){case"hex":return hexSlice(this,start,end);case"utf8":case"utf-8":return utf8Slice(this,start,end);case"ascii":return asciiSlice(this,start,end);case"latin1":case"binary":return latin1Slice(this,start,end);case"base64":return base64Slice(this,start,end);case"ucs2":case"ucs-2":case"utf16le":case"utf-16le":return utf16leSlice(this,start,end);default:if(loweredCase)throw new TypeError("Unknown encoding: "+encoding);encoding=(encoding+"").toLowerCase();loweredCase=true}}}Buffer.prototype._isBuffer=true;function swap(b,n,m){var i=b[n];b[n]=b[m];b[m]=i}Buffer.prototype.swap16=function swap16(){var len=this.length;if(len%2!==0){throw new RangeError("Buffer size must be a multiple of 16-bits")}for(var i=0;imax)str+=" ... ";return""};Buffer.prototype.compare=function compare(target,start,end,thisStart,thisEnd){if(isInstance(target,Uint8Array)){target=Buffer.from(target,target.offset,target.byteLength)}if(!Buffer.isBuffer(target)){throw new TypeError('The "target" argument must be one of type Buffer or Uint8Array. '+"Received type "+typeof target)}if(start===undefined){start=0}if(end===undefined){end=target?target.length:0}if(thisStart===undefined){thisStart=0}if(thisEnd===undefined){thisEnd=this.length}if(start<0||end>target.length||thisStart<0||thisEnd>this.length){throw new RangeError("out of range index")}if(thisStart>=thisEnd&&start>=end){return 0}if(thisStart>=thisEnd){return-1}if(start>=end){return 1}start>>>=0;end>>>=0;thisStart>>>=0;thisEnd>>>=0;if(this===target)return 0;var x=thisEnd-thisStart;var y=end-start;var len=Math.min(x,y);var thisCopy=this.slice(thisStart,thisEnd);var targetCopy=target.slice(start,end);for(var i=0;i2147483647){byteOffset=2147483647}else if(byteOffset<-2147483648){byteOffset=-2147483648}byteOffset=+byteOffset;if(numberIsNaN(byteOffset)){byteOffset=dir?0:buffer.length-1}if(byteOffset<0)byteOffset=buffer.length+byteOffset;if(byteOffset>=buffer.length){if(dir)return-1;else byteOffset=buffer.length-1}else if(byteOffset<0){if(dir)byteOffset=0;else return-1}if(typeof val==="string"){val=Buffer.from(val,encoding)}if(Buffer.isBuffer(val)){if(val.length===0){return-1}return arrayIndexOf(buffer,val,byteOffset,encoding,dir)}else if(typeof val==="number"){val=val&255;if(typeof Uint8Array.prototype.indexOf==="function"){if(dir){return Uint8Array.prototype.indexOf.call(buffer,val,byteOffset)}else{return Uint8Array.prototype.lastIndexOf.call(buffer,val,byteOffset)}}return arrayIndexOf(buffer,[val],byteOffset,encoding,dir)}throw new TypeError("val must be string, number or Buffer")}function arrayIndexOf(arr,val,byteOffset,encoding,dir){var indexSize=1;var arrLength=arr.length;var valLength=val.length;if(encoding!==undefined){encoding=String(encoding).toLowerCase();if(encoding==="ucs2"||encoding==="ucs-2"||encoding==="utf16le"||encoding==="utf-16le"){if(arr.length<2||val.length<2){return-1}indexSize=2;arrLength/=2;valLength/=2;byteOffset/=2}}function read(buf,i){if(indexSize===1){return buf[i]}else{return buf.readUInt16BE(i*indexSize)}}var i;if(dir){var foundIndex=-1;for(i=byteOffset;iarrLength)byteOffset=arrLength-valLength;for(i=byteOffset;i>=0;i--){var found=true;for(var j=0;jremaining){length=remaining}}var strLen=string.length;if(length>strLen/2){length=strLen/2}for(var i=0;i>>0;if(isFinite(length)){length=length>>>0;if(encoding===undefined)encoding="utf8"}else{encoding=length;length=undefined}}else{throw new Error("Buffer.write(string, encoding, offset[, length]) is no longer supported")}var remaining=this.length-offset;if(length===undefined||length>remaining)length=remaining;if(string.length>0&&(length<0||offset<0)||offset>this.length){throw new RangeError("Attempt to write outside buffer bounds")}if(!encoding)encoding="utf8";var loweredCase=false;for(;;){switch(encoding){case"hex":return hexWrite(this,string,offset,length);case"utf8":case"utf-8":return utf8Write(this,string,offset,length);case"ascii":return asciiWrite(this,string,offset,length);case"latin1":case"binary":return latin1Write(this,string,offset,length);case"base64":return base64Write(this,string,offset,length);case"ucs2":case"ucs-2":case"utf16le":case"utf-16le":return ucs2Write(this,string,offset,length);default:if(loweredCase)throw new TypeError("Unknown encoding: "+encoding);encoding=(""+encoding).toLowerCase();loweredCase=true}}};Buffer.prototype.toJSON=function toJSON(){return{type:"Buffer",data:Array.prototype.slice.call(this._arr||this,0)}};function base64Slice(buf,start,end){if(start===0&&end===buf.length){return base64.fromByteArray(buf)}else{return base64.fromByteArray(buf.slice(start,end))}}function utf8Slice(buf,start,end){end=Math.min(buf.length,end);var res=[];var i=start;while(i239?4:firstByte>223?3:firstByte>191?2:1;if(i+bytesPerSequence<=end){var secondByte,thirdByte,fourthByte,tempCodePoint;switch(bytesPerSequence){case 1:if(firstByte<128){codePoint=firstByte}break;case 2:secondByte=buf[i+1];if((secondByte&192)===128){tempCodePoint=(firstByte&31)<<6|secondByte&63;if(tempCodePoint>127){codePoint=tempCodePoint}}break;case 3:secondByte=buf[i+1];thirdByte=buf[i+2];if((secondByte&192)===128&&(thirdByte&192)===128){tempCodePoint=(firstByte&15)<<12|(secondByte&63)<<6|thirdByte&63;if(tempCodePoint>2047&&(tempCodePoint<55296||tempCodePoint>57343)){codePoint=tempCodePoint}}break;case 4:secondByte=buf[i+1];thirdByte=buf[i+2];fourthByte=buf[i+3];if((secondByte&192)===128&&(thirdByte&192)===128&&(fourthByte&192)===128){tempCodePoint=(firstByte&15)<<18|(secondByte&63)<<12|(thirdByte&63)<<6|fourthByte&63;if(tempCodePoint>65535&&tempCodePoint<1114112){codePoint=tempCodePoint}}}}if(codePoint===null){codePoint=65533;bytesPerSequence=1}else if(codePoint>65535){codePoint-=65536;res.push(codePoint>>>10&1023|55296);codePoint=56320|codePoint&1023}res.push(codePoint);i+=bytesPerSequence}return decodeCodePointsArray(res)}var MAX_ARGUMENTS_LENGTH=4096;function decodeCodePointsArray(codePoints){var len=codePoints.length;if(len<=MAX_ARGUMENTS_LENGTH){return String.fromCharCode.apply(String,codePoints)}var res="";var i=0;while(ilen)end=len;var out="" +;for(var i=start;ilen){start=len}if(end<0){end+=len;if(end<0)end=0}else if(end>len){end=len}if(endlength)throw new RangeError("Trying to access beyond buffer length")}Buffer.prototype.readUIntLE=function readUIntLE(offset,byteLength,noAssert){offset=offset>>>0;byteLength=byteLength>>>0;if(!noAssert)checkOffset(offset,byteLength,this.length);var val=this[offset];var mul=1;var i=0;while(++i>>0;byteLength=byteLength>>>0;if(!noAssert){checkOffset(offset,byteLength,this.length)}var val=this[offset+--byteLength];var mul=1;while(byteLength>0&&(mul*=256)){val+=this[offset+--byteLength]*mul}return val};Buffer.prototype.readUInt8=function readUInt8(offset,noAssert){offset=offset>>>0;if(!noAssert)checkOffset(offset,1,this.length);return this[offset]};Buffer.prototype.readUInt16LE=function readUInt16LE(offset,noAssert){offset=offset>>>0;if(!noAssert)checkOffset(offset,2,this.length);return this[offset]|this[offset+1]<<8};Buffer.prototype.readUInt16BE=function readUInt16BE(offset,noAssert){offset=offset>>>0;if(!noAssert)checkOffset(offset,2,this.length);return this[offset]<<8|this[offset+1]};Buffer.prototype.readUInt32LE=function readUInt32LE(offset,noAssert){offset=offset>>>0;if(!noAssert)checkOffset(offset,4,this.length);return(this[offset]|this[offset+1]<<8|this[offset+2]<<16)+this[offset+3]*16777216};Buffer.prototype.readUInt32BE=function readUInt32BE(offset,noAssert){offset=offset>>>0;if(!noAssert)checkOffset(offset,4,this.length);return this[offset]*16777216+(this[offset+1]<<16|this[offset+2]<<8|this[offset+3])};Buffer.prototype.readIntLE=function readIntLE(offset,byteLength,noAssert){offset=offset>>>0;byteLength=byteLength>>>0;if(!noAssert)checkOffset(offset,byteLength,this.length);var val=this[offset];var mul=1;var i=0;while(++i=mul)val-=Math.pow(2,8*byteLength);return val};Buffer.prototype.readIntBE=function readIntBE(offset,byteLength,noAssert){offset=offset>>>0;byteLength=byteLength>>>0;if(!noAssert)checkOffset(offset,byteLength,this.length);var i=byteLength;var mul=1;var val=this[offset+--i];while(i>0&&(mul*=256)){val+=this[offset+--i]*mul}mul*=128;if(val>=mul)val-=Math.pow(2,8*byteLength);return val};Buffer.prototype.readInt8=function readInt8(offset,noAssert){offset=offset>>>0;if(!noAssert)checkOffset(offset,1,this.length);if(!(this[offset]&128))return this[offset];return(255-this[offset]+1)*-1};Buffer.prototype.readInt16LE=function readInt16LE(offset,noAssert){offset=offset>>>0;if(!noAssert)checkOffset(offset,2,this.length);var val=this[offset]|this[offset+1]<<8;return val&32768?val|4294901760:val};Buffer.prototype.readInt16BE=function readInt16BE(offset,noAssert){offset=offset>>>0;if(!noAssert)checkOffset(offset,2,this.length);var val=this[offset+1]|this[offset]<<8;return val&32768?val|4294901760:val};Buffer.prototype.readInt32LE=function readInt32LE(offset,noAssert){offset=offset>>>0;if(!noAssert)checkOffset(offset,4,this.length);return this[offset]|this[offset+1]<<8|this[offset+2]<<16|this[offset+3]<<24};Buffer.prototype.readInt32BE=function readInt32BE(offset,noAssert){offset=offset>>>0;if(!noAssert)checkOffset(offset,4,this.length);return this[offset]<<24|this[offset+1]<<16|this[offset+2]<<8|this[offset+3]};Buffer.prototype.readFloatLE=function readFloatLE(offset,noAssert){offset=offset>>>0;if(!noAssert)checkOffset(offset,4,this.length);return ieee754.read(this,offset,true,23,4)};Buffer.prototype.readFloatBE=function readFloatBE(offset,noAssert){offset=offset>>>0;if(!noAssert)checkOffset(offset,4,this.length);return ieee754.read(this,offset,false,23,4)};Buffer.prototype.readDoubleLE=function readDoubleLE(offset,noAssert){offset=offset>>>0;if(!noAssert)checkOffset(offset,8,this.length);return ieee754.read(this,offset,true,52,8)};Buffer.prototype.readDoubleBE=function readDoubleBE(offset,noAssert){offset=offset>>>0;if(!noAssert)checkOffset(offset,8,this.length);return ieee754.read(this,offset,false,52,8)};function checkInt(buf,value,offset,ext,max,min){if(!Buffer.isBuffer(buf))throw new TypeError('"buffer" argument must be a Buffer instance');if(value>max||valuebuf.length)throw new RangeError("Index out of range")}Buffer.prototype.writeUIntLE=function writeUIntLE(value,offset,byteLength,noAssert){value=+value;offset=offset>>>0;byteLength=byteLength>>>0;if(!noAssert){var maxBytes=Math.pow(2,8*byteLength)-1;checkInt(this,value,offset,byteLength,maxBytes,0)}var mul=1;var i=0;this[offset]=value&255;while(++i>>0;byteLength=byteLength>>>0;if(!noAssert){var maxBytes=Math.pow(2,8*byteLength)-1;checkInt(this,value,offset,byteLength,maxBytes,0)}var i=byteLength-1;var mul=1;this[offset+i]=value&255;while(--i>=0&&(mul*=256)){this[offset+i]=value/mul&255}return offset+byteLength};Buffer.prototype.writeUInt8=function writeUInt8(value,offset,noAssert){value=+value;offset=offset>>>0;if(!noAssert)checkInt(this,value,offset,1,255,0);this[offset]=value&255;return offset+1};Buffer.prototype.writeUInt16LE=function writeUInt16LE(value,offset,noAssert){value=+value;offset=offset>>>0;if(!noAssert)checkInt(this,value,offset,2,65535,0);this[offset]=value&255;this[offset+1]=value>>>8;return offset+2};Buffer.prototype.writeUInt16BE=function writeUInt16BE(value,offset,noAssert){value=+value;offset=offset>>>0;if(!noAssert)checkInt(this,value,offset,2,65535,0);this[offset]=value>>>8;this[offset+1]=value&255;return offset+2};Buffer.prototype.writeUInt32LE=function writeUInt32LE(value,offset,noAssert){value=+value;offset=offset>>>0;if(!noAssert)checkInt(this,value,offset,4,4294967295,0);this[offset+3]=value>>>24;this[offset+2]=value>>>16;this[offset+1]=value>>>8;this[offset]=value&255;return offset+4};Buffer.prototype.writeUInt32BE=function writeUInt32BE(value,offset,noAssert){value=+value;offset=offset>>>0;if(!noAssert)checkInt(this,value,offset,4,4294967295,0);this[offset]=value>>>24;this[offset+1]=value>>>16;this[offset+2]=value>>>8;this[offset+3]=value&255;return offset+4};Buffer.prototype.writeIntLE=function writeIntLE(value,offset,byteLength,noAssert){value=+value;offset=offset>>>0;if(!noAssert){var limit=Math.pow(2,8*byteLength-1);checkInt(this,value,offset,byteLength,limit-1,-limit)}var i=0;var mul=1;var sub=0;this[offset]=value&255;while(++i>0)-sub&255}return offset+byteLength};Buffer.prototype.writeIntBE=function writeIntBE(value,offset,byteLength,noAssert){value=+value;offset=offset>>>0;if(!noAssert){var limit=Math.pow(2,8*byteLength-1);checkInt(this,value,offset,byteLength,limit-1,-limit)}var i=byteLength-1;var mul=1;var sub=0;this[offset+i]=value&255;while(--i>=0&&(mul*=256)){if(value<0&&sub===0&&this[offset+i+1]!==0){sub=1}this[offset+i]=(value/mul>>0)-sub&255}return offset+byteLength};Buffer.prototype.writeInt8=function writeInt8(value,offset,noAssert){value=+value;offset=offset>>>0;if(!noAssert)checkInt(this,value,offset,1,127,-128);if(value<0)value=255+value+1;this[offset]=value&255;return offset+1};Buffer.prototype.writeInt16LE=function writeInt16LE(value,offset,noAssert){value=+value;offset=offset>>>0;if(!noAssert)checkInt(this,value,offset,2,32767,-32768);this[offset]=value&255;this[offset+1]=value>>>8;return offset+2};Buffer.prototype.writeInt16BE=function writeInt16BE(value,offset,noAssert){value=+value;offset=offset>>>0;if(!noAssert)checkInt(this,value,offset,2,32767,-32768);this[offset]=value>>>8;this[offset+1]=value&255;return offset+2};Buffer.prototype.writeInt32LE=function writeInt32LE(value,offset,noAssert){value=+value;offset=offset>>>0;if(!noAssert)checkInt(this,value,offset,4,2147483647,-2147483648);this[offset]=value&255;this[offset+1]=value>>>8;this[offset+2]=value>>>16;this[offset+3]=value>>>24;return offset+4};Buffer.prototype.writeInt32BE=function writeInt32BE(value,offset,noAssert){value=+value;offset=offset>>>0;if(!noAssert)checkInt(this,value,offset,4,2147483647,-2147483648);if(value<0)value=4294967295+value+1;this[offset]=value>>>24;this[offset+1]=value>>>16;this[offset+2]=value>>>8;this[offset+3]=value&255;return offset+4};function checkIEEE754(buf,value,offset,ext,max,min){if(offset+ext>buf.length)throw new RangeError("Index out of range");if(offset<0)throw new RangeError("Index out of range")}function writeFloat(buf,value,offset,littleEndian,noAssert){value=+value;offset=offset>>>0;if(!noAssert){checkIEEE754(buf,value,offset,4,3.4028234663852886e38,-3.4028234663852886e38)}ieee754.write(buf,value,offset,littleEndian,23,4);return offset+4}Buffer.prototype.writeFloatLE=function writeFloatLE(value,offset,noAssert){return writeFloat(this,value,offset,true,noAssert)};Buffer.prototype.writeFloatBE=function writeFloatBE(value,offset,noAssert){return writeFloat(this,value,offset,false,noAssert)};function writeDouble(buf,value,offset,littleEndian,noAssert){value=+value;offset=offset>>>0;if(!noAssert){checkIEEE754(buf,value,offset,8,1.7976931348623157e308,-1.7976931348623157e308)}ieee754.write(buf,value,offset,littleEndian,52,8);return offset+8}Buffer.prototype.writeDoubleLE=function writeDoubleLE(value,offset,noAssert){return writeDouble(this,value,offset,true,noAssert)};Buffer.prototype.writeDoubleBE=function writeDoubleBE(value,offset,noAssert){return writeDouble(this,value,offset,false,noAssert)};Buffer.prototype.copy=function copy(target,targetStart,start,end){if(!Buffer.isBuffer(target))throw new TypeError("argument should be a Buffer");if(!start)start=0;if(!end&&end!==0)end=this.length;if(targetStart>=target.length)targetStart=target.length;if(!targetStart)targetStart=0;if(end>0&&end=this.length)throw new RangeError("Index out of range");if(end<0)throw new RangeError("sourceEnd out of bounds");if(end>this.length)end=this.length;if(target.length-targetStart=0;--i){target[i+targetStart]=this[i+start]}}else{Uint8Array.prototype.set.call(target,this.subarray(start,end),targetStart)}return len};Buffer.prototype.fill=function fill(val,start,end,encoding){if(typeof val==="string"){if(typeof start==="string"){encoding=start;start=0;end=this.length}else if(typeof end==="string"){encoding=end;end=this.length}if(encoding!==undefined&&typeof encoding!=="string"){throw new TypeError("encoding must be a string")}if(typeof encoding==="string"&&!Buffer.isEncoding(encoding)){throw new TypeError("Unknown encoding: "+encoding)}if(val.length===1){var code=val.charCodeAt(0);if(encoding==="utf8"&&code<128||encoding==="latin1"){val=code}}}else if(typeof val==="number"){val=val&255}if(start<0||this.length>>0;end=end===undefined?this.length:end>>>0;if(!val)val=0;var i;if(typeof val==="number"){for(i=start;i55295&&codePoint<57344){if(!leadSurrogate){if(codePoint>56319){if((units-=3)>-1)bytes.push(239,191,189);continue}else if(i+1===length){if((units-=3)>-1)bytes.push(239,191,189);continue}leadSurrogate=codePoint;continue}if(codePoint<56320){if((units-=3)>-1)bytes.push(239,191,189);leadSurrogate=codePoint;continue}codePoint=(leadSurrogate-55296<<10|codePoint-56320)+65536}else if(leadSurrogate){if((units-=3)>-1)bytes.push(239,191,189)}leadSurrogate=null;if(codePoint<128){if((units-=1)<0)break;bytes.push(codePoint)}else if(codePoint<2048){if((units-=2)<0)break;bytes.push(codePoint>>6|192,codePoint&63|128)}else if(codePoint<65536){if((units-=3)<0)break;bytes.push(codePoint>>12|224,codePoint>>6&63|128,codePoint&63|128)}else if(codePoint<1114112){if((units-=4)<0)break;bytes.push(codePoint>>18|240,codePoint>>12&63|128,codePoint>>6&63|128,codePoint&63|128)}else{throw new Error("Invalid code point")}}return bytes}function asciiToBytes(str){var byteArray=[];for(var i=0;i>8;lo=c%256;byteArray.push(lo);byteArray.push(hi)}return byteArray}function base64ToBytes(str){return base64.toByteArray(base64clean(str))}function blitBuffer(src,dst,offset,length){for(var i=0;i=dst.length||i>=src.length)break;dst[i+offset]=src[i]}return i}function isInstance(obj,type){return obj instanceof type||obj!=null&&obj.constructor!=null&&obj.constructor.name!=null&&obj.constructor.name===type.name}function numberIsNaN(obj){return obj!==obj}},{"base64-js":2,ieee754:11}],7:[function(require,module,exports){(function(Buffer){function isArray(arg){if(Array.isArray){return Array.isArray(arg)}return objectToString(arg)==="[object Array]"}exports.isArray=isArray;function isBoolean(arg){return typeof arg==="boolean"}exports.isBoolean=isBoolean;function isNull(arg){return arg===null}exports.isNull=isNull;function isNullOrUndefined(arg){return arg==null}exports.isNullOrUndefined=isNullOrUndefined;function isNumber(arg){return typeof arg==="number"}exports.isNumber=isNumber;function isString(arg){return typeof arg==="string"}exports.isString=isString;function isSymbol(arg){return typeof arg==="symbol"}exports.isSymbol=isSymbol;function isUndefined(arg){return arg===void 0}exports.isUndefined=isUndefined;function isRegExp(re){return objectToString(re)==="[object RegExp]"}exports.isRegExp=isRegExp;function isObject(arg){return typeof arg==="object"&&arg!==null}exports.isObject=isObject;function isDate(d){return objectToString(d)==="[object Date]"}exports.isDate=isDate;function isError(e){return objectToString(e)==="[object Error]"||e instanceof Error}exports.isError=isError;function isFunction(arg){return typeof arg==="function"}exports.isFunction=isFunction;function isPrimitive(arg){return arg===null||typeof arg==="boolean"||typeof arg==="number"||typeof arg==="string"||typeof arg==="symbol"||typeof arg==="undefined"}exports.isPrimitive=isPrimitive;exports.isBuffer=Buffer.isBuffer;function objectToString(o){return Object.prototype.toString.call(o)}}).call(this,{isBuffer:require("../../is-buffer/index.js")})},{"../../is-buffer/index.js":13}],8:[function(require,module,exports){(function(process,Buffer){var stream=require("readable-stream");var eos=require("end-of-stream");var inherits=require("inherits");var shift=require("stream-shift");var SIGNAL_FLUSH=Buffer.from&&Buffer.from!==Uint8Array.from?Buffer.from([0]):new Buffer([0]);var onuncork=function(self,fn){if(self._corked)self.once("uncork",fn);else fn()};var autoDestroy=function(self,err){if(self._autoDestroy)self.destroy(err)};var destroyer=function(self,end){return function(err){if(err)autoDestroy(self,err.message==="premature close"?null:err);else if(end&&!self._ended)self.end()}};var end=function(ws,fn){if(!ws)return fn();if(ws._writableState&&ws._writableState.finished)return fn();if(ws._writableState)return ws.end(fn);ws.end();fn()};var toStreams2=function(rs){return new stream.Readable({objectMode:true,highWaterMark:16}).wrap(rs)};var Duplexify=function(writable,readable,opts){if(!(this instanceof Duplexify))return new Duplexify(writable,readable,opts);stream.Duplex.call(this,opts);this._writable=null;this._readable=null;this._readable2=null;this._autoDestroy=!opts||opts.autoDestroy!==false;this._forwardDestroy=!opts||opts.destroy!==false;this._forwardEnd=!opts||opts.end!==false;this._corked=1;this._ondrain=null;this._drained=false;this._forwarding=false;this._unwrite=null;this._unread=null;this._ended=false;this.destroyed=false;if(writable)this.setWritable(writable);if(readable)this.setReadable(readable)};inherits(Duplexify,stream.Duplex);Duplexify.obj=function(writable,readable,opts){if(!opts)opts={};opts.objectMode=true;opts.highWaterMark=16;return new Duplexify(writable,readable,opts)};Duplexify.prototype.cork=function(){if(++this._corked===1)this.emit("cork")};Duplexify.prototype.uncork=function(){if(this._corked&&--this._corked===0)this.emit("uncork")};Duplexify.prototype.setWritable=function(writable){if(this._unwrite)this._unwrite();if(this.destroyed){if(writable&&writable.destroy)writable.destroy();return}if(writable===null||writable===false){this.end();return}var self=this;var unend=eos(writable,{writable:true,readable:false},destroyer(this,this._forwardEnd));var ondrain=function(){var ondrain=self._ondrain;self._ondrain=null;if(ondrain)ondrain()};var clear=function(){self._writable.removeListener("drain",ondrain);unend()};if(this._unwrite)process.nextTick(ondrain);this._writable=writable;this._writable.on("drain",ondrain);this._unwrite=clear;this.uncork()};Duplexify.prototype.setReadable=function(readable){if(this._unread)this._unread();if(this.destroyed){if(readable&&readable.destroy)readable.destroy();return}if(readable===null||readable===false){this.push(null);this.resume();return}var self=this;var unend=eos(readable,{writable:false,readable:true},destroyer(this));var onreadable=function(){self._forward()};var onend=function(){self.push(null)};var clear=function(){self._readable2.removeListener("readable",onreadable);self._readable2.removeListener("end",onend);unend()};this._drained=true;this._readable=readable;this._readable2=readable._readableState?readable:toStreams2(readable);this._readable2.on("readable",onreadable);this._readable2.on("end",onend);this._unread=clear;this._forward()};Duplexify.prototype._read=function(){this._drained=true;this._forward()};Duplexify.prototype._forward=function(){if(this._forwarding||!this._readable2||!this._drained)return;this._forwarding=true;var data;while(this._drained&&(data=shift(this._readable2))!==null){if(this.destroyed)continue;this._drained=this.push(data)}this._forwarding=false};Duplexify.prototype.destroy=function(err){if(this.destroyed)return;this.destroyed=true;var self=this;process.nextTick(function(){self._destroy(err)})};Duplexify.prototype._destroy=function(err){if(err){var ondrain=this._ondrain;this._ondrain=null;if(ondrain)ondrain(err);else this.emit("error",err)}if(this._forwardDestroy){if(this._readable&&this._readable.destroy)this._readable.destroy();if(this._writable&&this._writable.destroy)this._writable.destroy()}this.emit("close")};Duplexify.prototype._write=function(data,enc,cb){if(this.destroyed)return cb();if(this._corked)return onuncork(this,this._write.bind(this,data,enc,cb));if(data===SIGNAL_FLUSH)return this._finish(cb);if(!this._writable)return cb();if(this._writable.write(data)===false)this._ondrain=cb;else cb()};Duplexify.prototype._finish=function(cb){var self=this;this.emit("preend");onuncork(this,function(){end(self._forwardEnd&&self._writable,function(){if(self._writableState.prefinished===false)self._writableState.prefinished=true;self.emit("prefinish");onuncork(self,cb)})})};Duplexify.prototype.end=function(data,enc,cb){if(typeof data==="function")return this.end(null,null,data);if(typeof enc==="function")return this.end(data,null,enc);this._ended=true;if(data)this.write(data);if(!this._writableState.ending)this.write(SIGNAL_FLUSH);return stream.Writable.prototype.end.call(this,cb)};module.exports=Duplexify}).call(this,require("_process"),require("buffer").Buffer)},{_process:17,buffer:6,"end-of-stream":9,inherits:12,"readable-stream":30,"stream-shift":36}],9:[function(require,module,exports){var once=require("once");var noop=function(){};var isRequest=function(stream){return stream.setHeader&&typeof stream.abort==="function"};var isChildProcess=function(stream){return stream.stdio&&Array.isArray(stream.stdio)&&stream.stdio.length===3};var eos=function(stream,opts,callback){if(typeof opts==="function")return eos(stream,null,opts);if(!opts)opts={};callback=once(callback||noop);var ws=stream._writableState;var rs=stream._readableState;var readable=opts.readable||opts.readable!==false&&stream.readable;var writable=opts.writable||opts.writable!==false&&stream.writable;var onlegacyfinish=function(){if(!stream.writable)onfinish()};var onfinish=function(){writable=false;if(!readable)callback.call(stream)};var onend=function(){readable=false;if(!writable)callback.call(stream)};var onexit=function(exitCode){callback.call(stream,exitCode?new Error("exited with error code: "+exitCode):null)};var onerror=function(err){callback.call(stream,err)};var onclose=function(){if(readable&&!(rs&&rs.ended))return callback.call(stream,new Error("premature close"));if(writable&&!(ws&&ws.ended))return callback.call(stream,new Error("premature close"))};var onrequest=function(){stream.req.on("finish",onfinish)};if(isRequest(stream)){stream.on("complete",onfinish);stream.on("abort",onclose);if(stream.req)onrequest();else stream.on("request",onrequest)}else if(writable&&!ws){stream.on("end",onlegacyfinish);stream.on("close",onlegacyfinish)}if(isChildProcess(stream))stream.on("exit",onexit);stream.on("end",onend);stream.on("finish",onfinish);if(opts.error!==false)stream.on("error",onerror);stream.on("close",onclose);return function(){stream.removeListener("complete",onfinish);stream.removeListener("abort",onclose);stream.removeListener("request",onrequest);if(stream.req)stream.req.removeListener("finish",onfinish);stream.removeListener("end",onlegacyfinish);stream.removeListener("close",onlegacyfinish);stream.removeListener("finish",onfinish);stream.removeListener("exit",onexit);stream.removeListener("end",onend);stream.removeListener("error",onerror);stream.removeListener("close",onclose)}};module.exports=eos},{once:15}],10:[function(require,module,exports){function EventEmitter(){this._events=this._events||{};this._maxListeners=this._maxListeners||undefined}module.exports=EventEmitter;EventEmitter.EventEmitter=EventEmitter;EventEmitter.prototype._events=undefined;EventEmitter.prototype._maxListeners=undefined;EventEmitter.defaultMaxListeners=10;EventEmitter.prototype.setMaxListeners=function(n){if(!isNumber(n)||n<0||isNaN(n))throw TypeError("n must be a positive number");this._maxListeners=n;return this};EventEmitter.prototype.emit=function(type){var er,handler,len,args,i,listeners;if(!this._events)this._events={};if(type==="error"){if(!this._events.error||isObject(this._events.error)&&!this._events.error.length){er=arguments[1];if(er instanceof Error){throw er}else{var err=new Error('Uncaught, unspecified "error" event. ('+er+")");err.context=er;throw err}}}handler=this._events[type];if(isUndefined(handler))return false;if(isFunction(handler)){switch(arguments.length){case 1:handler.call(this);break;case 2:handler.call(this,arguments[1]);break;case 3:handler.call(this,arguments[1],arguments[2]);break;default:args=Array.prototype.slice.call(arguments,1);handler.apply(this,args)}}else if(isObject(handler)){args=Array.prototype.slice.call(arguments,1);listeners=handler.slice();len=listeners.length;for(i=0;i0&&this._events[type].length>m){this._events[type].warned=true;console.error("(node) warning: possible EventEmitter memory "+"leak detected. %d listeners added. "+"Use emitter.setMaxListeners() to increase limit.",this._events[type].length);if(typeof console.trace==="function"){console.trace()}}}return this};EventEmitter.prototype.on=EventEmitter.prototype.addListener;EventEmitter.prototype.once=function(type,listener){if(!isFunction(listener))throw TypeError("listener must be a function");var fired=false;function g(){this.removeListener(type,g);if(!fired){fired=true;listener.apply(this,arguments)}}g.listener=listener;this.on(type,g);return this};EventEmitter.prototype.removeListener=function(type,listener){var list,position,length,i;if(!isFunction(listener))throw TypeError("listener must be a function");if(!this._events||!this._events[type])return this;list=this._events[type];length=list.length;position=-1;if(list===listener||isFunction(list.listener)&&list.listener===listener){delete this._events[type];if(this._events.removeListener)this.emit("removeListener",type,listener)}else if(isObject(list)){for(i=length;i-- >0;){if(list[i]===listener||list[i].listener&&list[i].listener===listener){position=i;break}}if(position<0)return this;if(list.length===1){list.length=0;delete this._events[type]}else{list.splice(position,1)}if(this._events.removeListener)this.emit("removeListener",type,listener)}return this};EventEmitter.prototype.removeAllListeners=function(type){var key,listeners;if(!this._events)return this;if(!this._events.removeListener){if(arguments.length===0)this._events={};else if(this._events[type])delete this._events[type];return this}if(arguments.length===0){for(key in this._events){if(key==="removeListener")continue;this.removeAllListeners(key)}this.removeAllListeners("removeListener");this._events={};return this}listeners=this._events[type];if(isFunction(listeners)){this.removeListener(type,listeners)}else if(listeners){while(listeners.length)this.removeListener(type,listeners[listeners.length-1])}delete this._events[type];return this};EventEmitter.prototype.listeners=function(type){var ret;if(!this._events||!this._events[type])ret=[];else if(isFunction(this._events[type]))ret=[this._events[type]];else ret=this._events[type].slice();return ret};EventEmitter.prototype.listenerCount=function(type){if(this._events){var evlistener=this._events[type];if(isFunction(evlistener))return 1;else if(evlistener)return evlistener.length}return 0};EventEmitter.listenerCount=function(emitter,type){return emitter.listenerCount(type)};function isFunction(arg){return typeof arg==="function"}function isNumber(arg){return typeof arg==="number"}function isObject(arg){return typeof arg==="object"&&arg!==null}function isUndefined(arg){return arg===void 0}},{}],11:[function(require,module,exports){exports.read=function(buffer,offset,isLE,mLen,nBytes){var e,m;var eLen=nBytes*8-mLen-1;var eMax=(1<>1;var nBits=-7;var i=isLE?nBytes-1:0;var d=isLE?-1:1;var s=buffer[offset+i];i+=d;e=s&(1<<-nBits)-1;s>>=-nBits;nBits+=eLen;for(;nBits>0;e=e*256+buffer[offset+i],i+=d,nBits-=8){}m=e&(1<<-nBits)-1;e>>=-nBits;nBits+=mLen;for(;nBits>0;m=m*256+buffer[offset+i],i+=d,nBits-=8){}if(e===0){e=1-eBias}else if(e===eMax){return m?NaN:(s?-1:1)*Infinity}else{m=m+Math.pow(2,mLen);e=e-eBias}return(s?-1:1)*m*Math.pow(2,e-mLen)};exports.write=function(buffer,value,offset,isLE,mLen,nBytes){var e,m,c;var eLen=nBytes*8-mLen-1;var eMax=(1<>1;var rt=mLen===23?Math.pow(2,-24)-Math.pow(2,-77):0;var i=isLE?0:nBytes-1;var d=isLE?1:-1;var s=value<0||value===0&&1/value<0?1:0;value=Math.abs(value);if(isNaN(value)||value===Infinity){m=isNaN(value)?1:0;e=eMax}else{e=Math.floor(Math.log(value)/Math.LN2);if(value*(c=Math.pow(2,-e))<1){e--;c*=2}if(e+eBias>=1){value+=rt/c}else{value+=rt*Math.pow(2,1-eBias)}if(value*c>=2){e++;c/=2}if(e+eBias>=eMax){m=0;e=eMax}else if(e+eBias>=1){m=(value*c-1)*Math.pow(2,mLen);e=e+eBias}else{m=value*Math.pow(2,eBias-1)*Math.pow(2,mLen);e=0}}for(;mLen>=8;buffer[offset+i]=m&255,i+=d,m/=256,mLen-=8){}e=e<0;buffer[offset+i]=e&255,i+=d,e/=256,eLen-=8){}buffer[offset+i-d]|=s*128}},{}],12:[function(require,module,exports){if(typeof Object.create==="function"){module.exports=function inherits(ctor,superCtor){ctor.super_=superCtor;ctor.prototype=Object.create(superCtor.prototype,{constructor:{value:ctor,enumerable:false,writable:true,configurable:true}})}}else{module.exports=function inherits(ctor,superCtor){ctor.super_=superCtor;var TempCtor=function(){};TempCtor.prototype=superCtor.prototype;ctor.prototype=new TempCtor;ctor.prototype.constructor=ctor}}},{}],13:[function(require,module,exports){module.exports=function(obj){return obj!=null&&(isBuffer(obj)||isSlowBuffer(obj)||!!obj._isBuffer)};function isBuffer(obj){return!!obj.constructor&&typeof obj.constructor.isBuffer==="function"&&obj.constructor.isBuffer(obj)}function isSlowBuffer(obj){return typeof obj.readFloatLE==="function"&&typeof obj.slice==="function"&&isBuffer(obj.slice(0,0))}},{}],14:[function(require,module,exports){var toString={}.toString;module.exports=Array.isArray||function(arr){return toString.call(arr)=="[object Array]"}},{}],15:[function(require,module,exports){var wrappy=require("wrappy");module.exports=wrappy(once);module.exports.strict=wrappy(onceStrict);once.proto=once(function(){Object.defineProperty(Function.prototype,"once",{value:function(){return once(this)},configurable:true});Object.defineProperty(Function.prototype,"onceStrict",{value:function(){return onceStrict(this)},configurable:true})});function once(fn){var f=function(){if(f.called)return f.value;f.called=true;return f.value=fn.apply(this,arguments)};f.called=false;return f}function onceStrict(fn){var f=function(){if(f.called)throw new Error(f.onceError);f.called=true;return f.value=fn.apply(this,arguments)};var name=fn.name||"Function wrapped with `once`";f.onceError=name+" shouldn't be called more than once";f.called=false;return f}},{wrappy:44}],16:[function(require,module,exports){(function(process){"use strict";if(!process.version||process.version.indexOf("v0.")===0||process.version.indexOf("v1.")===0&&process.version.indexOf("v1.8.")!==0){module.exports={nextTick:nextTick}}else{module.exports=process}function nextTick(fn,arg1,arg2,arg3){if(typeof fn!=="function"){throw new TypeError('"callback" argument must be a function')}var len=arguments.length;var args,i;switch(len){case 0:case 1:return process.nextTick(fn);case 2:return process.nextTick(function afterTickOne(){fn.call(null,arg1)});case 3: +return process.nextTick(function afterTickTwo(){fn.call(null,arg1,arg2)});case 4:return process.nextTick(function afterTickThree(){fn.call(null,arg1,arg2,arg3)});default:args=new Array(len-1);i=0;while(i1){for(var i=1;i0;return destroyer(stream,reading,writing,function(err){if(!error)error=err;if(err)destroys.forEach(call);if(reading)return;destroys.forEach(call);callback(error)})});streams.reduce(pipe)};module.exports=pump}).call(this,require("_process"))},{_process:17,"end-of-stream":9,fs:4,once:15}],19:[function(require,module,exports){var pump=require("pump");var inherits=require("inherits");var Duplexify=require("duplexify");var toArray=function(args){if(!args.length)return[];return Array.isArray(args[0])?args[0]:Array.prototype.slice.call(args)};var define=function(opts){var Pumpify=function(){var streams=toArray(arguments);if(!(this instanceof Pumpify))return new Pumpify(streams);Duplexify.call(this,null,null,opts);if(streams.length)this.setPipeline(streams)};inherits(Pumpify,Duplexify);Pumpify.prototype.setPipeline=function(){var streams=toArray(arguments);var self=this;var ended=false;var w=streams[0];var r=streams[streams.length-1];r=r.readable?r:null;w=w.writable?w:null;var onclose=function(){streams[0].emit("error",new Error("stream was destroyed"))};this.on("close",onclose);this.on("prefinish",function(){if(!ended)self.cork()});pump(streams,function(err){self.removeListener("close",onclose);if(err)return self.destroy(err.message==="premature close"?null:err);ended=true;if(self._autoDestroy===false)self._autoDestroy=true;self.uncork()});if(this.destroyed)return onclose();this.setWritable(w);this.setReadable(r)};return Pumpify};module.exports=define({autoDestroy:false,destroy:false});module.exports.obj=define({autoDestroy:false,destroy:false,objectMode:true,highWaterMark:16});module.exports.ctor=define},{duplexify:8,inherits:12,pump:18}],20:[function(require,module,exports){module.exports=require("./lib/_stream_duplex.js")},{"./lib/_stream_duplex.js":21}],21:[function(require,module,exports){"use strict";var pna=require("process-nextick-args");var objectKeys=Object.keys||function(obj){var keys=[];for(var key in obj){keys.push(key)}return keys};module.exports=Duplex;var util=require("core-util-is");util.inherits=require("inherits");var Readable=require("./_stream_readable");var Writable=require("./_stream_writable");util.inherits(Duplex,Readable);{var keys=objectKeys(Writable.prototype);for(var v=0;v0){if(typeof chunk!=="string"&&!state.objectMode&&Object.getPrototypeOf(chunk)!==Buffer.prototype){chunk=_uint8ArrayToBuffer(chunk)}if(addToFront){if(state.endEmitted)stream.emit("error",new Error("stream.unshift() after end event"));else addChunk(stream,state,chunk,true)}else if(state.ended){stream.emit("error",new Error("stream.push() after EOF"))}else{state.reading=false;if(state.decoder&&!encoding){chunk=state.decoder.write(chunk);if(state.objectMode||chunk.length!==0)addChunk(stream,state,chunk,false);else maybeReadMore(stream,state)}else{addChunk(stream,state,chunk,false)}}}else if(!addToFront){state.reading=false}}return needMoreData(state)}function addChunk(stream,state,chunk,addToFront){if(state.flowing&&state.length===0&&!state.sync){stream.emit("data",chunk);stream.read(0)}else{state.length+=state.objectMode?1:chunk.length;if(addToFront)state.buffer.unshift(chunk);else state.buffer.push(chunk);if(state.needReadable)emitReadable(stream)}maybeReadMore(stream,state)}function chunkInvalid(state,chunk){var er;if(!_isUint8Array(chunk)&&typeof chunk!=="string"&&chunk!==undefined&&!state.objectMode){er=new TypeError("Invalid non-string/buffer chunk")}return er}function needMoreData(state){return!state.ended&&(state.needReadable||state.length=MAX_HWM){n=MAX_HWM}else{n--;n|=n>>>1;n|=n>>>2;n|=n>>>4;n|=n>>>8;n|=n>>>16;n++}return n}function howMuchToRead(n,state){if(n<=0||state.length===0&&state.ended)return 0;if(state.objectMode)return 1;if(n!==n){if(state.flowing&&state.length)return state.buffer.head.data.length;else return state.length}if(n>state.highWaterMark)state.highWaterMark=computeNewHighWaterMark(n);if(n<=state.length)return n;if(!state.ended){state.needReadable=true;return 0}return state.length}Readable.prototype.read=function(n){debug("read",n);n=parseInt(n,10);var state=this._readableState;var nOrig=n;if(n!==0)state.emittedReadable=false;if(n===0&&state.needReadable&&(state.length>=state.highWaterMark||state.ended)){debug("read: emitReadable",state.length,state.ended);if(state.length===0&&state.ended)endReadable(this);else emitReadable(this);return null}n=howMuchToRead(n,state);if(n===0&&state.ended){if(state.length===0)endReadable(this);return null}var doRead=state.needReadable;debug("need readable",doRead);if(state.length===0||state.length-n0)ret=fromList(n,state);else ret=null;if(ret===null){state.needReadable=true;n=0}else{state.length-=n}if(state.length===0){if(!state.ended)state.needReadable=true;if(nOrig!==n&&state.ended)endReadable(this)}if(ret!==null)this.emit("data",ret);return ret};function onEofChunk(stream,state){if(state.ended)return;if(state.decoder){var chunk=state.decoder.end();if(chunk&&chunk.length){state.buffer.push(chunk);state.length+=state.objectMode?1:chunk.length}}state.ended=true;emitReadable(stream)}function emitReadable(stream){var state=stream._readableState;state.needReadable=false;if(!state.emittedReadable){debug("emitReadable",state.flowing);state.emittedReadable=true;if(state.sync)pna.nextTick(emitReadable_,stream);else emitReadable_(stream)}}function emitReadable_(stream){debug("emit readable");stream.emit("readable");flow(stream)}function maybeReadMore(stream,state){if(!state.readingMore){state.readingMore=true;pna.nextTick(maybeReadMore_,stream,state)}}function maybeReadMore_(stream,state){var len=state.length;while(!state.reading&&!state.flowing&&!state.ended&&state.length1&&indexOf(state.pipes,dest)!==-1)&&!cleanedUp){debug("false write response, pause",src._readableState.awaitDrain);src._readableState.awaitDrain++;increasedAwaitDrain=true}src.pause()}}function onerror(er){debug("onerror",er);unpipe();dest.removeListener("error",onerror);if(EElistenerCount(dest,"error")===0)dest.emit("error",er)}prependListener(dest,"error",onerror);function onclose(){dest.removeListener("finish",onfinish);unpipe()}dest.once("close",onclose);function onfinish(){debug("onfinish");dest.removeListener("close",onclose);unpipe()}dest.once("finish",onfinish);function unpipe(){debug("unpipe");src.unpipe(dest)}dest.emit("pipe",src);if(!state.flowing){debug("pipe resume");src.resume()}return dest};function pipeOnDrain(src){return function(){var state=src._readableState;debug("pipeOnDrain",state.awaitDrain);if(state.awaitDrain)state.awaitDrain--;if(state.awaitDrain===0&&EElistenerCount(src,"data")){state.flowing=true;flow(src)}}}Readable.prototype.unpipe=function(dest){var state=this._readableState;var unpipeInfo={hasUnpiped:false};if(state.pipesCount===0)return this;if(state.pipesCount===1){if(dest&&dest!==state.pipes)return this;if(!dest)dest=state.pipes;state.pipes=null;state.pipesCount=0;state.flowing=false;if(dest)dest.emit("unpipe",this,unpipeInfo);return this}if(!dest){var dests=state.pipes;var len=state.pipesCount;state.pipes=null;state.pipesCount=0;state.flowing=false;for(var i=0;i=state.length){if(state.decoder)ret=state.buffer.join("");else if(state.buffer.length===1)ret=state.buffer.head.data;else ret=state.buffer.concat(state.length);state.buffer.clear()}else{ret=fromListPartial(n,state.buffer,state.decoder)}return ret}function fromListPartial(n,list,hasStrings){var ret;if(nstr.length?str.length:n;if(nb===str.length)ret+=str;else ret+=str.slice(0,n);n-=nb;if(n===0){if(nb===str.length){++c;if(p.next)list.head=p.next;else list.head=list.tail=null}else{list.head=p;p.data=str.slice(nb)}break}++c}list.length-=c;return ret}function copyFromBuffer(n,list){var ret=Buffer.allocUnsafe(n);var p=list.head;var c=1;p.data.copy(ret);n-=p.data.length;while(p=p.next){var buf=p.data;var nb=n>buf.length?buf.length:n;buf.copy(ret,ret.length-n,0,nb);n-=nb;if(n===0){if(nb===buf.length){++c;if(p.next)list.head=p.next;else list.head=list.tail=null}else{list.head=p;p.data=buf.slice(nb)}break}++c}list.length-=c;return ret}function endReadable(stream){var state=stream._readableState;if(state.length>0)throw new Error('"endReadable()" called on non-empty stream');if(!state.endEmitted){state.ended=true;pna.nextTick(endReadableNT,state,stream)}}function endReadableNT(state,stream){if(!state.endEmitted&&state.length===0){state.endEmitted=true;stream.readable=false;stream.emit("end")}}function indexOf(xs,x){for(var i=0,l=xs.length;i-1?setImmediate:pna.nextTick;var Duplex;Writable.WritableState=WritableState;var util=require("core-util-is");util.inherits=require("inherits");var internalUtil={deprecate:require("util-deprecate")};var Stream=require("./internal/streams/stream");var Buffer=require("safe-buffer").Buffer;var OurUint8Array=global.Uint8Array||function(){};function _uint8ArrayToBuffer(chunk){return Buffer.from(chunk)}function _isUint8Array(obj){return Buffer.isBuffer(obj)||obj instanceof OurUint8Array}var destroyImpl=require("./internal/streams/destroy");util.inherits(Writable,Stream);function nop(){}function WritableState(options,stream){Duplex=Duplex||require("./_stream_duplex");options=options||{};var isDuplex=stream instanceof Duplex;this.objectMode=!!options.objectMode;if(isDuplex)this.objectMode=this.objectMode||!!options.writableObjectMode;var hwm=options.highWaterMark;var writableHwm=options.writableHighWaterMark;var defaultHwm=this.objectMode?16:16*1024;if(hwm||hwm===0)this.highWaterMark=hwm;else if(isDuplex&&(writableHwm||writableHwm===0))this.highWaterMark=writableHwm;else this.highWaterMark=defaultHwm;this.highWaterMark=Math.floor(this.highWaterMark);this.finalCalled=false;this.needDrain=false;this.ending=false;this.ended=false;this.finished=false;this.destroyed=false;var noDecode=options.decodeStrings===false;this.decodeStrings=!noDecode;this.defaultEncoding=options.defaultEncoding||"utf8";this.length=0;this.writing=false;this.corked=0;this.sync=true;this.bufferProcessing=false;this.onwrite=function(er){onwrite(stream,er)};this.writecb=null;this.writelen=0;this.bufferedRequest=null;this.lastBufferedRequest=null;this.pendingcb=0;this.prefinished=false;this.errorEmitted=false;this.bufferedRequestCount=0;this.corkedRequestsFree=new CorkedRequest(this)}WritableState.prototype.getBuffer=function getBuffer(){var current=this.bufferedRequest;var out=[];while(current){out.push(current);current=current.next}return out};(function(){try{Object.defineProperty(WritableState.prototype,"buffer",{get:internalUtil.deprecate(function(){return this.getBuffer()},"_writableState.buffer is deprecated. Use _writableState.getBuffer "+"instead.","DEP0003")})}catch(_){}})();var realHasInstance;if(typeof Symbol==="function"&&Symbol.hasInstance&&typeof Function.prototype[Symbol.hasInstance]==="function"){realHasInstance=Function.prototype[Symbol.hasInstance];Object.defineProperty(Writable,Symbol.hasInstance,{value:function(object){if(realHasInstance.call(this,object))return true;if(this!==Writable)return false;return object&&object._writableState instanceof WritableState}})}else{realHasInstance=function(object){return object instanceof this}}function Writable(options){Duplex=Duplex||require("./_stream_duplex");if(!realHasInstance.call(Writable,this)&&!(this instanceof Duplex)){return new Writable(options)}this._writableState=new WritableState(options,this);this.writable=true;if(options){if(typeof options.write==="function")this._write=options.write;if(typeof options.writev==="function")this._writev=options.writev;if(typeof options.destroy==="function")this._destroy=options.destroy;if(typeof options.final==="function")this._final=options.final}Stream.call(this)}Writable.prototype.pipe=function(){this.emit("error",new Error("Cannot pipe, not readable"))};function writeAfterEnd(stream,cb){var er=new Error("write after end");stream.emit("error",er);pna.nextTick(cb,er)}function validChunk(stream,state,chunk,cb){var valid=true;var er=false;if(chunk===null){er=new TypeError("May not write null values to stream")}else if(typeof chunk!=="string"&&chunk!==undefined&&!state.objectMode){er=new TypeError("Invalid non-string/buffer chunk")}if(er){stream.emit("error",er) +;pna.nextTick(cb,er);valid=false}return valid}Writable.prototype.write=function(chunk,encoding,cb){var state=this._writableState;var ret=false;var isBuf=!state.objectMode&&_isUint8Array(chunk);if(isBuf&&!Buffer.isBuffer(chunk)){chunk=_uint8ArrayToBuffer(chunk)}if(typeof encoding==="function"){cb=encoding;encoding=null}if(isBuf)encoding="buffer";else if(!encoding)encoding=state.defaultEncoding;if(typeof cb!=="function")cb=nop;if(state.ended)writeAfterEnd(this,cb);else if(isBuf||validChunk(this,state,chunk,cb)){state.pendingcb++;ret=writeOrBuffer(this,state,isBuf,chunk,encoding,cb)}return ret};Writable.prototype.cork=function(){var state=this._writableState;state.corked++};Writable.prototype.uncork=function(){var state=this._writableState;if(state.corked){state.corked--;if(!state.writing&&!state.corked&&!state.finished&&!state.bufferProcessing&&state.bufferedRequest)clearBuffer(this,state)}};Writable.prototype.setDefaultEncoding=function setDefaultEncoding(encoding){if(typeof encoding==="string")encoding=encoding.toLowerCase();if(!(["hex","utf8","utf-8","ascii","binary","base64","ucs2","ucs-2","utf16le","utf-16le","raw"].indexOf((encoding+"").toLowerCase())>-1))throw new TypeError("Unknown encoding: "+encoding);this._writableState.defaultEncoding=encoding;return this};function decodeChunk(state,chunk,encoding){if(!state.objectMode&&state.decodeStrings!==false&&typeof chunk==="string"){chunk=Buffer.from(chunk,encoding)}return chunk}Object.defineProperty(Writable.prototype,"writableHighWaterMark",{enumerable:false,get:function(){return this._writableState.highWaterMark}});function writeOrBuffer(stream,state,isBuf,chunk,encoding,cb){if(!isBuf){var newChunk=decodeChunk(state,chunk,encoding);if(chunk!==newChunk){isBuf=true;encoding="buffer";chunk=newChunk}}var len=state.objectMode?1:chunk.length;state.length+=len;var ret=state.length0)this.tail.next=entry;else this.head=entry;this.tail=entry;++this.length};BufferList.prototype.unshift=function unshift(v){var entry={data:v,next:this.head};if(this.length===0)this.tail=entry;this.head=entry;++this.length};BufferList.prototype.shift=function shift(){if(this.length===0)return;var ret=this.head.data;if(this.length===1)this.head=this.tail=null;else this.head=this.head.next;--this.length;return ret};BufferList.prototype.clear=function clear(){this.head=this.tail=null;this.length=0};BufferList.prototype.join=function join(s){if(this.length===0)return"";var p=this.head;var ret=""+p.data;while(p=p.next){ret+=s+p.data}return ret};BufferList.prototype.concat=function concat(n){if(this.length===0)return Buffer.alloc(0);if(this.length===1)return this.head.data;var ret=Buffer.allocUnsafe(n>>>0);var p=this.head;var i=0;while(p){copyBuffer(p.data,ret,i);i+=p.data.length;p=p.next}return ret};return BufferList}();if(util&&util.inspect&&util.inspect.custom){module.exports.prototype[util.inspect.custom]=function(){var obj=util.inspect({length:this.length});return this.constructor.name+" "+obj}}},{"safe-buffer":33,util:4}],27:[function(require,module,exports){"use strict";var pna=require("process-nextick-args");function destroy(err,cb){var _this=this;var readableDestroyed=this._readableState&&this._readableState.destroyed;var writableDestroyed=this._writableState&&this._writableState.destroyed;if(readableDestroyed||writableDestroyed){if(cb){cb(err)}else if(err&&(!this._writableState||!this._writableState.errorEmitted)){pna.nextTick(emitErrorNT,this,err)}return this}if(this._readableState){this._readableState.destroyed=true}if(this._writableState){this._writableState.destroyed=true}this._destroy(err||null,function(err){if(!cb&&err){pna.nextTick(emitErrorNT,_this,err);if(_this._writableState){_this._writableState.errorEmitted=true}}else if(cb){cb(err)}});return this}function undestroy(){if(this._readableState){this._readableState.destroyed=false;this._readableState.reading=false;this._readableState.ended=false;this._readableState.endEmitted=false}if(this._writableState){this._writableState.destroyed=false;this._writableState.ended=false;this._writableState.ending=false;this._writableState.finished=false;this._writableState.errorEmitted=false}}function emitErrorNT(self,err){self.emit("error",err)}module.exports={destroy:destroy,undestroy:undestroy}},{"process-nextick-args":16}],28:[function(require,module,exports){module.exports=require("events").EventEmitter},{events:10}],29:[function(require,module,exports){module.exports=require("./readable").PassThrough},{"./readable":30}],30:[function(require,module,exports){exports=module.exports=require("./lib/_stream_readable.js");exports.Stream=exports;exports.Readable=exports;exports.Writable=require("./lib/_stream_writable.js");exports.Duplex=require("./lib/_stream_duplex.js");exports.Transform=require("./lib/_stream_transform.js");exports.PassThrough=require("./lib/_stream_passthrough.js")},{"./lib/_stream_duplex.js":21,"./lib/_stream_passthrough.js":22,"./lib/_stream_readable.js":23,"./lib/_stream_transform.js":24,"./lib/_stream_writable.js":25}],31:[function(require,module,exports){module.exports=require("./readable").Transform},{"./readable":30}],32:[function(require,module,exports){module.exports=require("./lib/_stream_writable.js")},{"./lib/_stream_writable.js":25}],33:[function(require,module,exports){var buffer=require("buffer");var Buffer=buffer.Buffer;function copyProps(src,dst){for(var key in src){dst[key]=src[key]}}if(Buffer.from&&Buffer.alloc&&Buffer.allocUnsafe&&Buffer.allocUnsafeSlow){module.exports=buffer}else{copyProps(buffer,exports);exports.Buffer=SafeBuffer}function SafeBuffer(arg,encodingOrOffset,length){return Buffer(arg,encodingOrOffset,length)}copyProps(Buffer,SafeBuffer);SafeBuffer.from=function(arg,encodingOrOffset,length){if(typeof arg==="number"){throw new TypeError("Argument must not be a number")}return Buffer(arg,encodingOrOffset,length)};SafeBuffer.alloc=function(size,fill,encoding){if(typeof size!=="number"){throw new TypeError("Argument must be a number")}var buf=Buffer(size);if(fill!==undefined){if(typeof encoding==="string"){buf.fill(fill,encoding)}else{buf.fill(fill)}}else{buf.fill(0)}return buf};SafeBuffer.allocUnsafe=function(size){if(typeof size!=="number"){throw new TypeError("Argument must be a number")}return Buffer(size)};SafeBuffer.allocUnsafeSlow=function(size){if(typeof size!=="number"){throw new TypeError("Argument must be a number")}return buffer.SlowBuffer(size)}},{buffer:6}],34:[function(require,module,exports){var through=require("through");var Decoder=require("string_decoder").StringDecoder;module.exports=split;function split(matcher,mapper,options){var decoder=new Decoder;var soFar="";var maxLength=options&&options.maxLength;var trailing=options&&options.trailing===false?false:true;if("function"===typeof matcher)mapper=matcher,matcher=null;if(!matcher)matcher=/\r?\n/;function emit(stream,piece){if(mapper){try{piece=mapper(piece)}catch(err){return stream.emit("error",err)}if("undefined"!==typeof piece)stream.queue(piece)}else stream.queue(piece)}function next(stream,buffer){var pieces=((soFar!=null?soFar:"")+buffer).split(matcher);soFar=pieces.pop();if(maxLength&&soFar.length>maxLength)return stream.emit("error",new Error("maximum buffer reached"));for(var i=0;i>5===6)return 2;else if(byte>>4===14)return 3;else if(byte>>3===30)return 4;return byte>>6===2?-1:-2}function utf8CheckIncomplete(self,buf,i){var j=buf.length-1;if(j=0){if(nb>0)self.lastNeed=nb-1;return nb}if(--j=0){if(nb>0)self.lastNeed=nb-2;return nb}if(--j=0){if(nb>0){if(nb===2)nb=0;else self.lastNeed=nb-3}return nb}return 0}function utf8CheckExtraBytes(self,buf,p){if((buf[0]&192)!==128){self.lastNeed=0;return"�"}if(self.lastNeed>1&&buf.length>1){if((buf[1]&192)!==128){self.lastNeed=1;return"�"}if(self.lastNeed>2&&buf.length>2){if((buf[2]&192)!==128){self.lastNeed=2;return"�"}}}}function utf8FillLast(buf){var p=this.lastTotal-this.lastNeed;var r=utf8CheckExtraBytes(this,buf,p);if(r!==undefined)return r;if(this.lastNeed<=buf.length){buf.copy(this.lastChar,p,0,this.lastNeed);return this.lastChar.toString(this.encoding,0,this.lastTotal)}buf.copy(this.lastChar,p,0,buf.length);this.lastNeed-=buf.length}function utf8Text(buf,i){var total=utf8CheckIncomplete(this,buf,i);if(!this.lastNeed)return buf.toString("utf8",i);this.lastTotal=total;var end=buf.length-(total-this.lastNeed);buf.copy(this.lastChar,0,end);return buf.toString("utf8",i,end)}function utf8End(buf){var r=buf&&buf.length?this.write(buf):"";if(this.lastNeed)return r+"�";return r}function utf16Text(buf,i){if((buf.length-i)%2===0){var r=buf.toString("utf16le",i);if(r){var c=r.charCodeAt(r.length-1);if(c>=55296&&c<=56319){this.lastNeed=2;this.lastTotal=4;this.lastChar[0]=buf[buf.length-2];this.lastChar[1]=buf[buf.length-1];return r.slice(0,-1)}}return r}this.lastNeed=1;this.lastTotal=2;this.lastChar[0]=buf[buf.length-1];return buf.toString("utf16le",i,buf.length-1)}function utf16End(buf){var r=buf&&buf.length?this.write(buf):"";if(this.lastNeed){var end=this.lastTotal-this.lastNeed;return r+this.lastChar.toString("utf16le",0,end)}return r}function base64Text(buf,i){var n=(buf.length-i)%3;if(n===0)return buf.toString("base64",i);this.lastNeed=3-n;this.lastTotal=3;if(n===1){this.lastChar[0]=buf[buf.length-1]}else{this.lastChar[0]=buf[buf.length-2];this.lastChar[1]=buf[buf.length-1]}return buf.toString("base64",i,buf.length-n)}function base64End(buf){var r=buf&&buf.length?this.write(buf):"";if(this.lastNeed)return r+this.lastChar.toString("base64",0,3-this.lastNeed);return r}function simpleWrite(buf){return buf.toString(this.encoding)}function simpleEnd(buf){return buf&&buf.length?this.write(buf):""}},{"safe-buffer":33}],38:[function(require,module,exports){(function(process){var Stream=require("stream");exports=module.exports=through;through.through=through;function through(write,end,opts){write=write||function(data){this.queue(data)};end=end||function(){this.queue(null)};var ended=false,destroyed=false,buffer=[],_ended=false;var stream=new Stream;stream.readable=stream.writable=true;stream.paused=false;stream.autoDestroy=!(opts&&opts.autoDestroy===false);stream.write=function(data){write.call(this,data);return!stream.paused};function drain(){while(buffer.length&&!stream.paused){var data=buffer.shift();if(null===data)return stream.emit("end");else stream.emit("data",data)}}stream.queue=stream.push=function(data){if(_ended)return stream;if(data===null)_ended=true;buffer.push(data);drain();return stream};stream.on("end",function(){stream.readable=false;if(!stream.writable&&stream.autoDestroy)process.nextTick(function(){stream.destroy()})});function _end(){stream.writable=false;end.call(stream);if(!stream.readable&&stream.autoDestroy)stream.destroy()}stream.end=function(data){if(ended)return;ended=true;if(arguments.length)stream.write(data);_end();return stream};stream.destroy=function(){if(destroyed)return;destroyed=true;ended=true;buffer.length=0;stream.writable=stream.readable=false;stream.emit("close");return stream};stream.pause=function(){if(stream.paused)return;stream.paused=true;return stream};stream.resume=function(){if(stream.paused){stream.paused=false;stream.emit("resume")}drain();if(!stream.paused)stream.emit("drain");return stream};return stream}}).call(this,require("_process"))},{_process:17,stream:35}],39:[function(require,module,exports){(function(process){var Transform=require("readable-stream").Transform,inherits=require("util").inherits,xtend=require("xtend");function DestroyableTransform(opts){Transform.call(this,opts);this._destroyed=false}inherits(DestroyableTransform,Transform);DestroyableTransform.prototype.destroy=function(err){if(this._destroyed)return;this._destroyed=true;var self=this;process.nextTick(function(){if(err)self.emit("error",err);self.emit("close")})};function noop(chunk,enc,callback){callback(null,chunk)}function through2(construct){return function(options,transform,flush){if(typeof options=="function"){flush=transform;transform=options;options={}}if(typeof transform!="function")transform=noop;if(typeof flush!="function")flush=null;return construct(options,transform,flush)}}module.exports=through2(function(options,transform,flush){var t2=new DestroyableTransform(options);t2._transform=transform;if(flush)t2._flush=flush;return t2});module.exports.ctor=through2(function(options,transform,flush){function Through2(override){if(!(this instanceof Through2))return new Through2(override);this.options=xtend(options,override);DestroyableTransform.call(this,this.options)}inherits(Through2,DestroyableTransform);Through2.prototype._transform=transform;if(flush)Through2.prototype._flush=flush;return Through2});module.exports.obj=through2(function(options,transform,flush){var t2=new DestroyableTransform(xtend({objectMode:true,highWaterMark:16},options));t2._transform=transform;if(flush)t2._flush=flush;return t2})}).call(this,require("_process"))},{_process:17,"readable-stream":30,util:43,xtend:45}],40:[function(require,module,exports){(function(setImmediate,clearImmediate){var nextTick=require("process/browser.js").nextTick;var apply=Function.prototype.apply;var slice=Array.prototype.slice;var immediateIds={};var nextImmediateId=0;exports.setTimeout=function(){return new Timeout(apply.call(setTimeout,window,arguments),clearTimeout)};exports.setInterval=function(){return new Timeout(apply.call(setInterval,window,arguments),clearInterval)};exports.clearTimeout=exports.clearInterval=function(timeout){timeout.close()};function Timeout(id,clearFn){this._id=id;this._clearFn=clearFn}Timeout.prototype.unref=Timeout.prototype.ref=function(){};Timeout.prototype.close=function(){this._clearFn.call(window,this._id)};exports.enroll=function(item,msecs){clearTimeout(item._idleTimeoutId);item._idleTimeout=msecs};exports.unenroll=function(item){clearTimeout(item._idleTimeoutId);item._idleTimeout=-1};exports._unrefActive=exports.active=function(item){clearTimeout(item._idleTimeoutId);var msecs=item._idleTimeout;if(msecs>=0){item._idleTimeoutId=setTimeout(function onTimeout(){if(item._onTimeout)item._onTimeout()},msecs)}};exports.setImmediate=typeof setImmediate==="function"?setImmediate:function(fn){var id=nextImmediateId++;var args=arguments.length<2?false:slice.call(arguments,1);immediateIds[id]=true;nextTick(function onNextTick(){if(immediateIds[id]){if(args){fn.apply(null,args)}else{fn.call(null)}exports.clearImmediate(id)}});return id};exports.clearImmediate=typeof clearImmediate==="function"?clearImmediate:function(id){delete immediateIds[id]}}).call(this,require("timers").setImmediate,require("timers").clearImmediate)},{"process/browser.js":17,timers:40}],41:[function(require,module,exports){(function(global){module.exports=deprecate;function deprecate(fn,msg){if(config("noDeprecation")){return fn}var warned=false;function deprecated(){if(!warned){if(config("throwDeprecation")){throw new Error(msg)}else if(config("traceDeprecation")){console.trace(msg)}else{console.warn(msg)}warned=true}return fn.apply(this,arguments)}return deprecated}function config(name){try{if(!global.localStorage)return false}catch(_){return false}var val=global.localStorage[name];if(null==val)return false;return String(val).toLowerCase()==="true"}}).call(this,typeof global!=="undefined"?global:typeof self!=="undefined"?self:typeof window!=="undefined"?window:{})},{}],42:[function(require,module,exports){module.exports=function isBuffer(arg){return arg&&typeof arg==="object"&&typeof arg.copy==="function"&&typeof arg.fill==="function"&&typeof arg.readUInt8==="function"}},{}],43:[function(require,module,exports){(function(process,global){var formatRegExp=/%[sdj%]/g;exports.format=function(f){if(!isString(f)){var objects=[];for(var i=0;i=len)return x;switch(x){case"%s":return String(args[i++]);case"%d":return Number(args[i++]);case"%j":try{return JSON.stringify(args[i++])}catch(_){return"[Circular]"}default:return x}});for(var x=args[i];i=3)ctx.depth=arguments[2];if(arguments.length>=4)ctx.colors=arguments[3];if(isBoolean(opts)){ctx.showHidden=opts}else if(opts){exports._extend(ctx,opts)}if(isUndefined(ctx.showHidden))ctx.showHidden=false;if(isUndefined(ctx.depth))ctx.depth=2;if(isUndefined(ctx.colors))ctx.colors=false;if(isUndefined(ctx.customInspect))ctx.customInspect=true;if(ctx.colors)ctx.stylize=stylizeWithColor;return formatValue(ctx,obj,ctx.depth)}exports.inspect=inspect;inspect.colors={bold:[1,22],italic:[3,23],underline:[4,24],inverse:[7,27],white:[37,39],grey:[90,39],black:[30,39],blue:[34,39],cyan:[36,39],green:[32,39],magenta:[35,39],red:[31,39],yellow:[33,39]};inspect.styles={special:"cyan",number:"yellow",boolean:"yellow",undefined:"grey",null:"bold",string:"green",date:"magenta",regexp:"red"};function stylizeWithColor(str,styleType){var style=inspect.styles[styleType];if(style){return"["+inspect.colors[style][0]+"m"+str+"["+inspect.colors[style][1]+"m"}else{return str}}function stylizeNoColor(str,styleType){return str}function arrayToHash(array){var hash={};array.forEach(function(val,idx){hash[val]=true});return hash}function formatValue(ctx,value,recurseTimes){if(ctx.customInspect&&value&&isFunction(value.inspect)&&value.inspect!==exports.inspect&&!(value.constructor&&value.constructor.prototype===value)){var ret=value.inspect(recurseTimes,ctx);if(!isString(ret)){ret=formatValue(ctx,ret,recurseTimes)}return ret}var primitive=formatPrimitive(ctx,value);if(primitive){return primitive}var keys=Object.keys(value);var visibleKeys=arrayToHash(keys);if(ctx.showHidden){keys=Object.getOwnPropertyNames(value)}if(isError(value)&&(keys.indexOf("message")>=0||keys.indexOf("description")>=0)){return formatError(value)}if(keys.length===0){if(isFunction(value)){var name=value.name?": "+value.name:"";return ctx.stylize("[Function"+name+"]","special")}if(isRegExp(value)){return ctx.stylize(RegExp.prototype.toString.call(value),"regexp")}if(isDate(value)){return ctx.stylize(Date.prototype.toString.call(value),"date")}if(isError(value)){return formatError(value)}}var base="",array=false,braces=["{","}"];if(isArray(value)){array=true;braces=["[","]"]}if(isFunction(value)){var n=value.name?": "+value.name:"";base=" [Function"+n+"]"}if(isRegExp(value)){base=" "+RegExp.prototype.toString.call(value)}if(isDate(value)){base=" "+Date.prototype.toUTCString.call(value)}if(isError(value)){base=" "+formatError(value)}if(keys.length===0&&(!array||value.length==0)){return braces[0]+base+braces[1]}if(recurseTimes<0){if(isRegExp(value)){return ctx.stylize(RegExp.prototype.toString.call(value),"regexp")}else{return ctx.stylize("[Object]","special")}}ctx.seen.push(value);var output;if(array){output=formatArray(ctx,value,recurseTimes,visibleKeys,keys)}else{output=keys.map(function(key){return formatProperty(ctx,value,recurseTimes,visibleKeys,key,array)})}ctx.seen.pop();return reduceToSingleString(output,base,braces)}function formatPrimitive(ctx,value){if(isUndefined(value))return ctx.stylize("undefined","undefined");if(isString(value)){var simple="'"+JSON.stringify(value).replace(/^"|"$/g,"").replace(/'/g,"\\'").replace(/\\"/g,'"')+"'";return ctx.stylize(simple,"string")}if(isNumber(value))return ctx.stylize(""+value,"number");if(isBoolean(value))return ctx.stylize(""+value,"boolean");if(isNull(value))return ctx.stylize("null","null")}function formatError(value){return"["+Error.prototype.toString.call(value)+"]"}function formatArray(ctx,value,recurseTimes,visibleKeys,keys){var output=[];for(var i=0,l=value.length;i-1){if(array){str=str.split("\n").map(function(line){return" "+line +}).join("\n").substr(2)}else{str="\n"+str.split("\n").map(function(line){return" "+line}).join("\n")}}}else{str=ctx.stylize("[Circular]","special")}}if(isUndefined(name)){if(array&&key.match(/^\d+$/)){return str}name=JSON.stringify(""+key);if(name.match(/^"([a-zA-Z_][a-zA-Z_0-9]*)"$/)){name=name.substr(1,name.length-2);name=ctx.stylize(name,"name")}else{name=name.replace(/'/g,"\\'").replace(/\\"/g,'"').replace(/(^"|"$)/g,"'");name=ctx.stylize(name,"string")}}return name+": "+str}function reduceToSingleString(output,base,braces){var numLinesEst=0;var length=output.reduce(function(prev,cur){numLinesEst++;if(cur.indexOf("\n")>=0)numLinesEst++;return prev+cur.replace(/\u001b\[\d\d?m/g,"").length+1},0);if(length>60){return braces[0]+(base===""?"":base+"\n ")+" "+output.join(",\n ")+" "+braces[1]}return braces[0]+base+" "+output.join(", ")+" "+braces[1]}function isArray(ar){return Array.isArray(ar)}exports.isArray=isArray;function isBoolean(arg){return typeof arg==="boolean"}exports.isBoolean=isBoolean;function isNull(arg){return arg===null}exports.isNull=isNull;function isNullOrUndefined(arg){return arg==null}exports.isNullOrUndefined=isNullOrUndefined;function isNumber(arg){return typeof arg==="number"}exports.isNumber=isNumber;function isString(arg){return typeof arg==="string"}exports.isString=isString;function isSymbol(arg){return typeof arg==="symbol"}exports.isSymbol=isSymbol;function isUndefined(arg){return arg===void 0}exports.isUndefined=isUndefined;function isRegExp(re){return isObject(re)&&objectToString(re)==="[object RegExp]"}exports.isRegExp=isRegExp;function isObject(arg){return typeof arg==="object"&&arg!==null}exports.isObject=isObject;function isDate(d){return isObject(d)&&objectToString(d)==="[object Date]"}exports.isDate=isDate;function isError(e){return isObject(e)&&(objectToString(e)==="[object Error]"||e instanceof Error)}exports.isError=isError;function isFunction(arg){return typeof arg==="function"}exports.isFunction=isFunction;function isPrimitive(arg){return arg===null||typeof arg==="boolean"||typeof arg==="number"||typeof arg==="string"||typeof arg==="symbol"||typeof arg==="undefined"}exports.isPrimitive=isPrimitive;exports.isBuffer=require("./support/isBuffer");function objectToString(o){return Object.prototype.toString.call(o)}function pad(n){return n<10?"0"+n.toString(10):n.toString(10)}var months=["Jan","Feb","Mar","Apr","May","Jun","Jul","Aug","Sep","Oct","Nov","Dec"];function timestamp(){var d=new Date;var time=[pad(d.getHours()),pad(d.getMinutes()),pad(d.getSeconds())].join(":");return[d.getDate(),months[d.getMonth()],time].join(" ")}exports.log=function(){console.log("%s - %s",timestamp(),exports.format.apply(exports,arguments))};exports.inherits=require("inherits");exports._extend=function(origin,add){if(!add||!isObject(add))return origin;var keys=Object.keys(add);var i=keys.length;while(i--){origin[keys[i]]=add[keys[i]]}return origin};function hasOwnProperty(obj,prop){return Object.prototype.hasOwnProperty.call(obj,prop)}}).call(this,require("_process"),typeof global!=="undefined"?global:typeof self!=="undefined"?self:typeof window!=="undefined"?window:{})},{"./support/isBuffer":42,_process:17,inherits:12}],44:[function(require,module,exports){module.exports=wrappy;function wrappy(fn,cb){if(fn&&cb)return wrappy(fn)(cb);if(typeof fn!=="function")throw new TypeError("need wrapper function");Object.keys(fn).forEach(function(k){wrapper[k]=fn[k]});return wrapper;function wrapper(){var args=new Array(arguments.length);for(var i=0;i Date: Wed, 28 Nov 2018 20:32:18 +0100 Subject: [PATCH 3/4] Update docs --- docs/docco.css | 24 ++++-- docs/fasta-parser.html | 129 ++++++++++++++++++++++------ docs/public/fonts/roboto-black.eot | Bin 0 -> 20702 bytes docs/public/fonts/roboto-black.ttf | Bin 0 -> 44828 bytes docs/public/fonts/roboto-black.woff | Bin 0 -> 24536 bytes 5 files changed, 123 insertions(+), 30 deletions(-) create mode 100755 docs/public/fonts/roboto-black.eot create mode 100755 docs/public/fonts/roboto-black.ttf create mode 100755 docs/public/fonts/roboto-black.woff diff --git a/docs/docco.css b/docs/docco.css index a2899ac..b60f6fa 100644 --- a/docs/docco.css +++ b/docs/docco.css @@ -21,11 +21,11 @@ } @font-face { - font-family: 'novecento-bold'; - src: url('public/fonts/novecento-bold.eot'); - src: url('public/fonts/novecento-bold.eot?#iefix') format('embedded-opentype'), - url('public/fonts/novecento-bold.woff') format('woff'), - url('public/fonts/novecento-bold.ttf') format('truetype'); + font-family: 'roboto-black'; + src: url('public/fonts/roboto-black.eot'); + src: url('public/fonts/roboto-black.eot?#iefix') format('embedded-opentype'), + url('public/fonts/roboto-black.woff') format('woff'), + url('public/fonts/roboto-black.ttf') format('truetype'); font-weight: normal; font-style: normal; } @@ -67,7 +67,7 @@ h1, h2, h3, h4, h5, h6 { color: #112233; line-height: 1em; font-weight: normal; - font-family: "novecento-bold"; + font-family: "roboto-black"; text-transform: uppercase; margin: 30px 0 15px 0; } @@ -75,6 +75,9 @@ h1, h2, h3, h4, h5, h6 { h1 { margin-top: 40px; } +h2 { + font-size: 1.26em; +} hr { border: 0; @@ -180,9 +183,18 @@ ul.sections > li > div { display: block; } +#jump_page_wrapper{ + position: fixed; + right: 0; + top: 0; + bottom: 0; +} + #jump_page { padding: 5px 0 3px; margin: 0 0 25px 25px; + max-height: 100%; + overflow: auto; } #jump_page .source { diff --git a/docs/fasta-parser.html b/docs/fasta-parser.html index 41ed834..8be0ddd 100644 --- a/docs/fasta-parser.html +++ b/docs/fasta-parser.html @@ -26,7 +26,7 @@

fasta-parser

Buffer Stream parser from FASTA to JSON.

doi: ? author: Bruno Vieira -email: mail@bmpvieira.com +email: mail@bmpvieira.com license: MIT

@@ -47,13 +47,13 @@

Usage

var parser = require('fasta-parser') -var fastaData = new Buffer ('>sequence1\n\ +var fastaData = Buffer.from ('>sequence1\n\ ATGCACGTCACGTCAGTACTCGTCAGTAC\n\ >sequence2\n\ CAGTCCTACTGCATGCATGCATGCATGCATCGATGCATGTCGACTGCATGCATGC\n') var parser = fasta() -parser.on('data', function(data) { +parser.on('data', function(data) { console.log(JSON.parse(data.toString())) }) parser.write(fastaData) @@ -61,8 +61,14 @@

Usage

// { id: 'sequence1', // seq: 'ATGCACGTCACGTCAGTACTCGTCAGTAC' } // { id: 'sequence2', -// seq: 'CAGTCCTACTGCATGCATGCATGCATGCATCGATGCATGTCGACTGCATGCATGC' } -

For a more useful API, check the dependent module:

+// seq: 'CAGTCCTACTGCATGCATGCATGCATGCATCGATGCATGTCGACTGCATGCATGC' }

To include the reverse compliment of the sequences, pass arguments to the parser:

+
var parser = fasta(true) // Includes the reverse compliment for DNA sequences
+var parser = fasta(true, true) // Includes the reverse compliment for RNA sequences
+
+Example output:
+//   { id: 'sequence1',
+//     seq: 'ATGCACGTCACGTCAGTACTCGTCAGTAC',
+//     rc: 'TACGTGCAGTGCAGTCATGAGCAGTCATG' }

For a more useful API, check the dependent module:

bionode-fasta

@@ -71,43 +77,118 @@

Usage

var through = require('through2') var split = require('split') var pumpify = require('pumpify') +var BufferList = require('bl') -module.exports = function() { - return pumpify(split(), parser()) +module.exports = function (includeRevComp, isRna) { + includeRevComp = typeof (includeRevComp) === 'boolean' ? includeRevComp : false + isRna = typeof (isRna) === 'boolean' ? isRna : false + var bases = includeRevComp ? getBaseComplements(isRna) : false + return pumpify(split(), parser(bases)) } -function parser() { +function parser (bases) { var cacheBuf - var cacheBufLen = 8 - var openID = new Buffer('{"id":"') - var closeIDOpenSeq = new Buffer('","seq":"') - var closeSeq = new Buffer('"}\n') + var openID = Buffer.from('{"id":"') + var closeIDOpenSeq = Buffer.from('","seq":"') + var closeSeqOpenRevComp = Buffer.from('","rc":"') + var closeSeq = Buffer.from('"}\n') var stream = through(transform, flush) return stream - function transform(buf, enc, next) { + function transform (buf, enc, next) { if (buf[0] === 62) { // If line starts with '>', this is an ID if (cacheBuf) { // If a previous object is in cache, push it - cacheBuf = Buffer.concat([cacheBuf, closeSeq], cacheBufLen+3) - this.push(cacheBuf) + cacheBuf.append(closeSeq) + this.push(cacheBuf.slice()) } var id = buf.toString().slice(1).trim().replace(/"/g, '\\"') - cacheBufLen = id.length + 16 - cacheBuf = Buffer.concat([openID, new Buffer(id), closeIDOpenSeq], cacheBufLen) - } - else { - cacheBufLen += buf.length - cacheBuf = Buffer.concat([cacheBuf, buf], cacheBufLen) + cacheBuf = new BufferList() + cacheBuf.append(openID) + cacheBuf.append(id) + cacheBuf.append(closeIDOpenSeq) + } else { + if (buf.length === 0) { + + + + +
  • +
    + +
    + +
    +

    Ignore empty

    + +
    + + 
          } else if (!cacheBuf) {
+        this.emit('error', {msg: 'Failed fasta parsing', buf: buf})
+      } else {
+        cacheBuf.append(buf)
+        if (bases) { // If bases is thruthy then it contains a string with reference bases
+          cacheBuf.append(closeSeqOpenRevComp)
+          cacheBuf.append(getReverseCompliment(buf))
+        }
+      }
     }
     next()
   }
 
-  function flush() {
-    cacheBuf = Buffer.concat([cacheBuf, closeSeq], cacheBufLen+3)
-    this.push(cacheBuf)
+  function flush () {
+    if (cacheBuf) {
+      cacheBuf.append(closeSeq)
+      this.push(cacheBuf.slice())
+    }
     this.push(null)
   }
+
+  function getReverseCompliment (buf) {
+    var seq = buf.toString()
+    var complement = Buffer.alloc(seq.length)
+    for (var i = 0; i < seq.length; i++) {
+      var baseIndex = bases.indexOf(seq[i])
+      if (baseIndex > -1) {
    + +
    • + + +
  • +
    + +
    + +
    +

    If the base was found in the base reference, pick the base 4 positions to the right, which is the complementary base

    + +
    + + 
            complement.write(bases[bases.indexOf(seq[i]) + 4], i)
+      } else {
    + +
    • + + +
  • +
    + +
    + +
    +

    If no match was found (e.g. if specifying that a DNA sequence is RNA), set the complimentary base to 0

    + +
    + + 
            complement.write('0', i)
+      }
+    }
+    return complement
+  }
+}
+
+function getBaseComplements (isRna) {
+  return isRna ? 'AGCUUCGA' : 'ATGCTACG'
 }
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HcmV?d00001 From be11ee10cbe48f6ee187794de6f959c4f7a4ba08 Mon Sep 17 00:00:00 2001 From: busyfingers Date: Wed, 28 Nov 2018 20:40:20 +0100 Subject: [PATCH 4/4] Fix typos --- lib/fasta-parser.js | 12 ++++++------ test/fasta-parser.js | 2 +- 2 files changed, 7 insertions(+), 7 deletions(-) diff --git a/lib/fasta-parser.js b/lib/fasta-parser.js index 0f4d984..6fc6b41 100644 --- a/lib/fasta-parser.js +++ b/lib/fasta-parser.js @@ -30,10 +30,10 @@ // // { id: 'sequence2', // // seq: 'CAGTCCTACTGCATGCATGCATGCATGCATCGATGCATGTCGACTGCATGCATGC' } // -// To include the reverse compliment of the sequences, pass arguments to the parser: +// To include the reverse complement of the sequences, pass arguments to the parser: // -// var parser = fasta(true) // Includes the reverse compliment for DNA sequences -// var parser = fasta(true, true) // Includes the reverse compliment for RNA sequences +// var parser = fasta(true) // Includes the reverse complement for DNA sequences +// var parser = fasta(true, true) // Includes the reverse complement for RNA sequences // // Example output: // // { id: 'sequence1', @@ -86,7 +86,7 @@ function parser (bases) { cacheBuf.append(buf) if (bases) { // If bases is thruthy then it contains a string with reference bases cacheBuf.append(closeSeqOpenRevComp) - cacheBuf.append(getReverseCompliment(buf)) + cacheBuf.append(getReverseComplement(buf)) } } } @@ -101,7 +101,7 @@ function parser (bases) { this.push(null) } - function getReverseCompliment (buf) { + function getReverseComplement (buf) { var seq = buf.toString() var complement = Buffer.alloc(seq.length) for (var i = 0; i < seq.length; i++) { @@ -110,7 +110,7 @@ function parser (bases) { // If the base was found in the base reference, pick the base 4 positions to the right, which is the complementary base complement.write(bases[bases.indexOf(seq[i]) + 4], i) } else { - // If no match was found (e.g. if specifying that a DNA sequence is RNA), set the complimentary base to 0 + // If no match was found (e.g. if specifying that a DNA sequence is RNA), set the complementary base to 0 complement.write('0', i) } } diff --git a/test/fasta-parser.js b/test/fasta-parser.js index 86774d6..a4cfa77 100644 --- a/test/fasta-parser.js +++ b/test/fasta-parser.js @@ -36,7 +36,7 @@ test('Should parse a FASTA Buffer to a JSON Buffer', function (t) { parser.end() }) -test('Should include reverse compliment if specified', function (t) { +test('Should include reverse complement if specified', function (t) { t.plan(1) var result = [] var parser = fasta(true)