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Achievement: YOLOAchievement: Starstruckx2Achievement: Pull SharkAchievement: Arctic Code Vault Contributor

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cgroza/README.md

Hi! My name is Cristian. I am a computational geneticist studying structural variation.

  • Currently, I am completing the Banting Postdoctoral Fellowship with Dr. Guillaume Lettre at the Montreal Heart Institute.
  • Previously, I obtained my PhD from McGill University studying with Dr. Guillaume Bourque.

My work involves assembling human genomes and finding long stretches of DNA that are different between humans, called structural variants. I then develop tools to genotype these in rare disease cases, map their epigenetic state and associate them with phenotypes. I also hunt jumping genes for a living.

You can check all my research on Google Scholar.

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  1. GraffiTE GraffiTE Public

    GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered polymorphisms in read sets using genome-graphs.

    R 219 12

  2. panmethyl panmethyl Public

    Map Pacbio methylation data to genome graphs.

    Python 4 1

  3. BarcodeAsm BarcodeAsm Public

    C++

  4. SeqLib SeqLib Public

    Forked from walaj/SeqLib

    C++ htslib/bwa-mem/fermi interface for interrogating sequence data

    C++

  5. bifrost_jaccard bifrost_jaccard Public

    Compute jaccard similarity matrix between colors in a bifrost compacted colored de Bruijn graph.

    C++

  6. dotfiles dotfiles Public

    Emacs Lisp