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chae-jh/README.md

πŸ‘‹ Hi, I’m Jeongho Chae

Undergraduate Researcher @ UNC Chapel Hill (Furey Lab)

πŸ”¬ Research Interests

I work at the intersection of computational biology and translational research, with a focus on:

  • Chromatin accessibility, regulatory genomics, and ATAC-seq–based profiling
  • Statistical & algorithmic methods for cell-type deconvolution
  • Wavelet-based feature extraction and denoising for biological signals
  • Translational applications in immune and inflammatory diseases (e.g., IBD)
  • (Interest) Machine learning and AI-based approaches for biological inference

πŸ“ Publications

πŸ“Œ WAD: A wavelet-based linear programming method using L1-minimal reconstruction loss for accessible chromatin data deconvolution

Jeongho Chae, Benjamin McMichael, Terrence S. Furey
A wavelet-based linear programming framework for accurate and interpretable cell-type deconvolution of bulk ATAC-seq data.
Preprint, bioRxiv (2025)
[Preprint] Β· [Code]

πŸŽ“ Education

  • Korea University β€” B.S. in Life Sciences & Computer Science (2020-2026)
  • UNC Chapel Hill β€” Exchange Research Student (2025)

πŸ‘¨β€πŸ’» Experience

  • Undergraduate Research Assistant β€” Terry Furey Lab @ UNC (2025–Present)
  • Research Manager β€” Mankwang Corp., Start-up (2024)

πŸ“« Contact

πŸš΄β€β™‚οΈ Outside of Research

I’m also an ultra-cyclist β€” I biked 400 miles across South Korea on a cycling expedition.
During military service, I gained 17 kg through consistent training and eventually ranked 1st out of 400 soldiers in the physical fitness test.

I believe in persistence, discipline, and incremental progress in research and in life.

Pinned Loading

  1. WAD WAD Public

    A wavelet-based linear programming method using L1-minimal reconstruction loss for accessible chromatin data deconvolution

    Python 3

  2. cutandrun-pipeline cutandrun-pipeline Public

    A modular Snakemake pipeline for Cut&Run analysis, automating preprocessing, alignment, and differential peak calling.

    Python 1 1

  3. wasp-qtl-pipeline wasp-qtl-pipeline Public

    A reproducible Snakemake pipeline for WASP (allele-specific read mapping) to eliminate mapping bias through automated remapping and deduplication.

    Python 1