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26 changes: 24 additions & 2 deletions src/about/publications.md
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Expand Up @@ -6,14 +6,18 @@ If your work uses DataJoint or DataJoint Elements, please cite the respective

## 2026

+ Cotton, R. J. & Leonard, T. (2026). [BiomechAgent: AI-Assisted Biomechanical Analysis Through Code-Generating Agents](https://doi.org/10.48550/arXiv.2602.06975). *arXiv*.

+ Donahue, S., Djuraskovic, I., Shah, K., Sinz, F., Chafetz, R. & Cotton, R. J. (2026). [Calibrated Uncertainty for Trustworthy Clinical Gait Analysis Using Probabilistic Multiview Markerless Motion Capture](https://doi.org/10.48550/arXiv.2601.22412). *arXiv*.

+ Sun, X., Comrie, A. E., Kahn, A. E., Monroe, E. J., Joshi, A., Guidera, J. A., Denovellis, E. L., Krausz, T. A., Zhou, J., Thompson, P., Hernandez, J., Yorita, A., Haque, R., Berke, J. D., Daw, N. D. & Frank, L. M. (2026). [Meta-learning is expressed through altered prefrontal cortical dynamics](https://doi.org/10.64898/2026.01.01.697272). *bioRxiv*.

## 2025

+ Campagner, D., Bhagat, J., Lopes, G., Calcaterra, L., Pouget, A. G., Almeida, A., ... & SWC GCNU Experimental Neuroethology Group. (2025). [Aeon: an open-source platform to study the neural basis of ethological behaviours over naturalistic timescales](https://doi.org/10.1101/2025.07.31.664513). *bioRxiv*.

+ Bae, J. A., Baptiste, M., Bodor, A. L., Brittain, D., Buchanan, J., Bumbarger, D. J., Castro, M. A., Celii, B., Cobos, E., Collman, F., ... (2025). [Functional connectomics spanning multiple areas of mouse visual cortex](https://doi.org/10.1038/s41586-025-08790-w). *Nature*, 640(8058), 435-447.

+ Campagner, D., Bhagat, J., Lopes, G., Calcaterra, L., Pouget, A. G., Almeida, A., ... & SWC GCNU Experimental Neuroethology Group. (2025). [Aeon: an open-source platform to study the neural basis of ethological behaviours over naturalistic timescales](https://doi.org/10.1101/2025.07.31.664513). *bioRxiv*.

+ Celii, B., Papadopoulos, S., Ding, Z., Fahey, P. G., Wang, E., Papadopoulos, C., ... & Reimer, J. (2025). [NEURD offers automated proofreading and feature extraction for connectomics](https://doi.org/10.1038/s41586-025-08660-5). *Nature*, 640(8058), 487-496.

+ Coulter, M. E., Gillespie, A. K., Chu, J., Denovellis, E. L., Nguyen, T. T. K., Liu, D. F., Wadhwani, K., Sharma, B., Wang, K., Deng, X., Eden, U. T., Kemere, C. & Frank, L. M. (2025). [Closed-loop modulation of remote hippocampal representations with neurofeedback](https://doi.org/10.1016/j.neuron.2024.12.023). *Neuron*, 113(6), 949-961.
Expand All @@ -26,6 +30,8 @@ If your work uses DataJoint or DataJoint Elements, please cite the respective

+ Gillon, C.J., Baker, C., Ly, R., Balzani, E., Brunton, B.W., Schottdorf, M., Ghosh, S. and Dehghani, N.(2025). [Open data in neurophysiology: Advancements, solutions & challenges](https://doi.org/10.1523/ENEURO.0486-24.2025). *eNeuro*, 12(11).

+ Heiser, H., Kiessler, F., Roggenbach, A., Ibanez, V., Wieckhorst, M., Helmchen, F., Gjorgjieva, J. & Wahl, A.-S. (2025). [Brain-wide microstrokes affect the stability of memory circuits in the hippocampus](https://doi.org/10.1038/s41467-025-58688-4). *Nature Communications*, 16, 3462.

+ Huang, J.Y., Hess, M., Bajpai, A., Li, X., Hobson, L.N., Xu, A.J., Barton, S.J. and Lu, H.C.(2025). [From initial formation to developmental refinement: GABAergic inputs shape neuronal subnetworks in the primary somatosensory cortex](https://doi.org/10.1016/j.isci.2025.112104). *iScience*, 28(3).

+ Joshi, A., Comrie, A. E., Bray, S., Mankili, A., Guidera, J. A., Nevers, R., Sun, X., Monroe, E., Kharazia, V., Ly, R., Astudillo Maya, D., Morales-Rodriguez, D., Yu, J., Kiseleva, A., Perez, V. & Frank, L. M. (2025). [Disruption of theta-timescale spiking impairs learning but spares hippocampal replay](https://doi.org/10.1101/2025.09.15.675587). *bioRxiv*.
Expand All @@ -34,8 +40,16 @@ If your work uses DataJoint or DataJoint Elements, please cite the respective

+ Lees, R.M., Bianco, I.H., Campbell, R.A.A., Orlova, N., Peterka, D.S., Pichler, B., Smith, S.L., Yatsenko, D., Yu, C.H. & Packer, A.M. (2025). [Standardized measurements for monitoring and comparing multiphoton microscope systems](https://doi.org/10.1038/s41596-024-01120-w). *Nature Protocols*, 20, 2171–2208.

+ Oesterle, J., Ran, Y., Stahr, P., Kerr, J. N. D., Schubert, T., Berens, P. & Euler, T. (2025). [Task-specific regional circuit adaptations in distinct mouse retinal ganglion cells](https://doi.org/10.1126/sciadv.adp7075). *Science Advances*, 11(17).

+ Panzeri, M., Thiem, N., Hoffmann, C., Schillinger, U., Barapatre, N., Musall, S., Helmchen, F. & Wahl, A.-S. (2025). [Contralesional activity reflects compensation, while brainstem detour pathways support skilled motor recovery after stroke](https://doi.org/10.1101/2025.11.24.690099). *bioRxiv*.

+ Peiffer, J. D., Shah, K., Djuraskovic, I., Anarwala, S., Abdou, K., Patel, R., Jayabalan, P., Pennicooke, B. & Cotton, R. J. (2025). [Portable Biomechanics Laboratory: Clinically accessible movement analysis from a handheld smartphone](https://doi.org/10.48550/arXiv.2507.08268). *arXiv*.

+ Schmors, L., Kotkat, A.H., Bauer, Y., Huang, Z., Crombie, D., Meyerolbersleben, L.S., Sokoloski, S., Berens, P. & Busse, L. (2025). [Effects of corticothalamic feedback depend on visual responsiveness and stimulus type](https://doi.org/10.1016/j.isci.2025.112481). *iScience*, 28, 112481.

+ Sutlief, E., Zhang, S., Foresberg, K., Kaneko, R. & Hussain Shuler, M. G. (2025). [Reward-reset interval timing drives patch foraging decisions through neural state transitions in dorsomedial striatum](https://doi.org/10.1101/2025.09.29.679309). *bioRxiv*.

+ Sibener, L.J., Mosberger, A.C., Chen, T.X., Athalye, V.R., Murray, J.M. & Costa, R.M. (2025). [Dissociable roles of distinct thalamic circuits in learning reaches to spatial targets](https://doi.org/10.1038/s41467-025-58143-4). *Nature Communications*, 16, 2962.

## 2024
Expand All @@ -58,6 +72,8 @@ If your work uses DataJoint or DataJoint Elements, please cite the respective

## 2022

+ Claudi, F., Campagner, D. & Branco, T. (2022). [Innate heuristics and fast learning support escape route selection in mice](https://doi.org/10.1016/j.cub.2022.05.020). *Current Biology*, 32(13), 2980-2987.

+ Franke, K., Willeke, K. F., Ponder, K., Galdamez, M., Zhou, N., Muhammad, T., ... & Tolias, A. S. (2022). [State-dependent pupil dilation rapidly shifts visual feature selectivity](https://www.nature.com/articles/s41586-022-05270-3). *Nature*, 610(7930), 128-134.

+ Wang, Y., Chiola, S., Yang, G., Russell, C., Armstrong, C.J., Wu, Y., ... & Shcheglovitov, A. (2022). [Modeling human telencephalic development and autism-associated SHANK3 deficiency using organoids generated from single neural rosettes](https://doi.org/10.1038/s41467-022-33364-z). *Nature Communications*, 13, 5688.
Expand All @@ -84,6 +100,10 @@ If your work uses DataJoint or DataJoint Elements, please cite the respective

+ Laboratory, T. I. B., Aguillon-Rodriguez, V., Angelaki, D., Bayer, H., Bonacchi, N., Carandini, M., Cazettes, F., Chapuis, G., Churchland, A. K., Dan, Y., ... (2021). [Standardized and reproducible measurement of decision-making in mice](https://doi.org/10.7554/eLife.63711). *eLife*, 10.

+ Reimer, M. L., Bangalore, L., Waxman, S. G. & Tan, A. M. (2021). [Core principles for the implementation of the neurodata without borders data standard](https://doi.org/10.1016/j.jneumeth.2020.108972). *Journal of Neuroscience Methods*, 348, 108972.

+ Subramaniyan, M., Manivannan, S., Chelur, V., Tsetsenis, T., Jiang, E. & Dani, J. A. (2021). [Fear conditioning potentiates the hippocampal CA1 commissural pathway in vivo and increases awake phase sleep](https://doi.org/10.1002/hipo.23381). *Hippocampus*, 31(10), 1154-1175.

## 2020

+ Angelaki, D. E., Ng, J., Abrego, A. M., Cham, H. X., Asprodini, E. K., Dickman, J. D., & Laurens, J. (2020). [A gravity-based three-dimensional compass in the mouse brain](https://doi.org/10.1038/s41467-020-15566-5). *Nature Communications*, 11(1), 1-13.
Expand All @@ -106,6 +126,8 @@ If your work uses DataJoint or DataJoint Elements, please cite the respective

+ Franke, K., Berens, P., Schubert, T., Bethge, M., Euler, T., & Baden, T. (2017). [Inhibition decorrelates visual feature representations in the inner retina](https://doi.org/10.1038/nature21394). *Nature*, 542(7642), 439.

+ Shan, K. Q., Lubenov, E. V. & Siapas, A. G. (2017). [Model-based spike sorting with a mixture of drifting t-distributions](https://doi.org/10.1016/j.jneumeth.2017.06.017). *Journal of Neuroscience Methods*, 288, 82-98.

## 2016

+ Baden, T., Berens, P., Franke, K., Rosen, M. R., Bethge, M., & Euler, T. (2016). [The functional diversity of retinal ganglion cells in the mouse](https://doi.org/10.1038/nature16468). *Nature*, 529(7586), 345-350.
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