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first pass at saving all BAMs/CRAMs that might be needed

@jasonwalker80 jasonwalker80 requested a review from tmooney December 9, 2019 21:15
@jasonwalker80 jasonwalker80 changed the title Updated UMI workflow for basic UMI-aware alignment and qc Updated workflow for basic UMI-aware alignment and qc Dec 9, 2019
@chrisamiller
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Suggestion to add some "doc:" lines that explain the difference between the output crams

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@tmooney tmooney left a comment

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This generally makes sense to me. I agree that it'd be good to document what the differences between the three outputs are.

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3 participants