Merging Dev into Main

.github/workflows/python-test.yml

@@ -19,12 +19,7 @@ jobs:
       - name: Install dependencies
         run: |
           python -m pip install --upgrade pip
-          python -m pip install pytest pytest-cov pytest-benchmark pytest-mock
-          python -m pip install networkx
-          if [ -f requirements.txt ];
-          then
-            pip install -r requirements.txt;
-          fi
+          python -m pip install . pytest pytest-cov pytest-benchmark
       - name: Test with pytest and check test coverage
         run: |
           pytest --cov=ngraph --cov-fail-under=85

Dockerfile

@@ -1,21 +1,22 @@
 # Stage 1: Base image with system dependencies
-FROM python:3.13 AS base
+FROM python:3.13-slim AS base
 
 # Prevent interactive config during installation
 ENV DEBIAN_FRONTEND=noninteractive
 
 # Install system dependencies and cleanup
 RUN apt-get update && \
+    apt-get upgrade -y && \
     apt-get install -y \
-        build-essential \
-        cmake \
-        curl \
-        wget \
-        unzip \
-        git \
-        libgeos-dev \
-        libproj-dev \
-        libgdal-dev \
+    build-essential \
+    cmake \
+    curl \
+    wget \
+    unzip \
+    git \
+    libgeos-dev \
+    libproj-dev \
+    libgdal-dev \
     && apt-get clean && \
     rm -rf /var/lib/apt/lists/*
 
@@ -25,10 +26,6 @@ FROM base AS jupyterlab
 # Upgrade pip and setuptools
 RUN pip install --no-cache-dir --upgrade pip setuptools wheel
 
-# Copy requirements first to leverage cache
-COPY requirements.txt .
-RUN pip install --no-cache-dir -r requirements.txt
-
 # Install Python packages
 RUN pip install --no-cache-dir \
     numpy \
@@ -71,4 +68,4 @@ VOLUME /root/env
 ENTRYPOINT ["/tini", "-g", "--"]
 
 # Default command to run when the container starts
-CMD ["/bin/bash"]
+CMD ["/bin/bash"]

ngraph/__init__.py

@@ -1,7 +1,5 @@
-"""NetGraph package."""
-
 from __future__ import annotations
+from . import cli, transform
 
-from . import cli
 
-__all__ = ["cli"]
+__all__ = ["cli", "transform"]