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Problem setting PASA MySQL

Status: Open.

#1136 In nextgenusfs/funannotate;

· eggrandio opened on Dec 14, 2025

CMD ERROR in Singularity container: GeneMark fails with "Can't locate FindBin.pm in @INC

Status: Open.

#1135 In nextgenusfs/funannotate;

· Jaabbey2005 opened on Dec 12, 2025

CMD ERROR: pasa_asmbls_to_training_set.dbi; cdna_alignment_orf_to_genome_orf.pl: not found

Status: Open.

#1134 In nextgenusfs/funannotate;

· eggrandio opened on Dec 4, 2025

What's the -T1, T2, T3, T4, T5 in the GBK file means after the funannotate update command?

Status: Open.

#1133 In nextgenusfs/funannotate;

· RunJiaJi opened on Nov 28, 2025

funannotate misses the execute bit on scripts in <code>aux_scripts</code>

Status: Open.

#1129 In nextgenusfs/funannotate;

· bernt-matthias opened on Oct 6, 2025

Tips for visualisation

Status: Open.

#1127 In nextgenusfs/funannotate;

· pwkooij opened on Sep 26, 2025

error when running funannotate predict

Status: Open.

#1126 In nextgenusfs/funannotate;

· xiaorongsmile opened on Sep 22, 2025

funannotate test fails at signalp step

Status: Open.

#1120 In nextgenusfs/funannotate;

· vkkodali opened on Jul 28, 2025

Suggestion: option to specify evidence type to '--other_gff'

Status: Open.

#1119 In nextgenusfs/funannotate;

· jamesord opened on Jul 17, 2025

what data and files are needed for train step

Status: Open.

#1118 In nextgenusfs/funannotate;

· ds-gene104 opened on Jul 15, 2025

CMD ERROR: stringtie

Status: Open.

#1117 In nextgenusfs/funannotate;

· shanmugavadivelps opened on Jul 9, 2025

tmp files after predict run

Status: Open.

#1112 In nextgenusfs/funannotate;

· keroguynes opened on Jun 25, 2025