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@pbradleylab

Bradley Lab

Our long-term aim is to understand the gut microbiome as well as we currently understand model microbes.

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  1. 2023-anvio-comparison 2023-anvio-comparison Public

    Comparison of multiple annotation methods (Kofamscan, Microbeannotator, and anvi'o) using multiple prokaryotic families found across varying environments.

    R 2

  2. rnaseq-quantification-pipeline rnaseq-quantification-pipeline Public

    Developmental private RNASeq pipeline for bacterial quantification.

    Python 1

  3. phylogenize phylogenize Public

    A tool for phylogenetic comparison and analysis of microbe including gene's environmental association

    HTML

  4. PanSweep PanSweep Public

    R

  5. Updated_PanSweep_Figure_Code Updated_PanSweep_Figure_Code Public

    R

  6. cirrhosis-pansweep cirrhosis-pansweep Public

    Pipelines and analyses for use with PanSweep

    R

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