Skip to content

Conversation

@eseiler
Copy link
Member

@eseiler eseiler commented Aug 5, 2025

Resolves #196

Notes:

  • We could keep citation (no deprecation)
  • We could make citation something like (no API change):
    class stringy : public std::vector<std::string>
    {
        stringy(std::string str) : stringy({std::move(str)})
        // ...
    }

Before

    In your academic works please cite: (1) Raptor: A fast and space-efficient
    pre-filter for querying very large collections of nucleotide sequences;
    Enrico Seiler, Svenja Mehringer, Mitra Darvish, Etienne Turc, and Knut
    Reinert; iScience 2021 24 (7): 102782. doi:
    https://doi.org/10.1016/j.isci.2021.102782 (2) Hierarchical Interleaved
    Bloom Filter: enabling ultrafast, approximate sequence queries;Svenja
    Mehringer, Enrico Seiler, Felix Droop, Mitra Darvish, René Rahn, Martin
    Vingron, and Knut Reinert; Genome Biol 24, 131 (2023). doi:
    https://doi.org/10.1186/s13059-023-02971-4 (3) Hello Foo Bar

After

    In your academic works please cite:
    [1]   Raptor: A fast and space-efficient pre-filter for querying very
          large collections of nucleotide sequences; Enrico Seiler, Svenja
          Mehringer, Mitra Darvish, Etienne Turc, and Knut Reinert; iScience
          2021 24 (7): 102782. doi: https://doi.org/10.1016/j.isci.2021.102782
    [2]   Hierarchical Interleaved Bloom Filter: enabling ultrafast,
          approximate sequence queries;Svenja Mehringer, Enrico Seiler, Felix
          Droop, Mitra Darvish, René Rahn, Martin Vingron, and Knut Reinert;
          Genome Biol 24, 131 (2023). doi:
          https://doi.org/10.1186/s13059-023-02971-4
    [3]   Hello Foo Bar

@seqan-actions seqan-actions added lint [INTERNAL] signals that clang-format ran and removed lint [INTERNAL] signals that clang-format ran labels Aug 5, 2025
@codecov
Copy link

codecov bot commented Aug 5, 2025

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 94.37%. Comparing base (cb13c0c) to head (875b93b).
⚠️ Report is 2 commits behind head on main.

Additional details and impacted files
@@            Coverage Diff             @@
##             main     #280      +/-   ##
==========================================
+ Coverage   94.34%   94.37%   +0.03%     
==========================================
  Files          19       20       +1     
  Lines        1628     1637       +9     
  Branches       47       47              
==========================================
+ Hits         1536     1545       +9     
  Misses         92       92              

☔ View full report in Codecov by Sentry.
📢 Have feedback on the report? Share it here.

🚀 New features to boost your workflow:
  • ❄️ Test Analytics: Detect flaky tests, report on failures, and find test suite problems.

@seqan-actions seqan-actions added lint [INTERNAL] signals that clang-format ran and removed lint [INTERNAL] signals that clang-format ran labels Aug 5, 2025
@seqan-actions
Copy link
Member

Documentation preview available at https://docs.seqan.de/preview/seqan/sharg-parser/280

@seqan-actions seqan-actions added lint [INTERNAL] signals that clang-format ran and removed lint [INTERNAL] signals that clang-format ran labels Aug 5, 2025
@seqan-actions seqan-actions added lint [INTERNAL] signals that clang-format ran and removed lint [INTERNAL] signals that clang-format ran labels Aug 5, 2025
@eseiler eseiler marked this pull request as ready for review August 5, 2025 16:55
@seqan-actions seqan-actions added lint [INTERNAL] signals that clang-format ran and removed lint [INTERNAL] signals that clang-format ran labels Aug 6, 2025
@eseiler eseiler merged commit 044a18c into seqan:main Aug 6, 2025
36 checks passed
@eseiler eseiler deleted the feat/multi_cite branch August 6, 2025 08:44
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

[FEATURE] Multiple citations

2 participants