Remove circleCI

.github/workflows/tests.yml

@@ -0,0 +1,70 @@
+name: Tests
+
+on:
+  pull_request:
+  merge_group:
+  push:
+    branches: [main, test]
+
+jobs:
+  pre-commit:
+    name: Lint
+    runs-on: ubuntu-24.04
+    steps:
+      - name: Cancel Previous Runs
+        uses: styfle/cancel-workflow-action@0.12.1
+        with:
+          access_token: ${{ github.token }}
+      - uses: actions/checkout@v4.2.2
+      - uses: actions/setup-python@v5.4.0
+        with:
+          python-version: '3.12'
+      - uses: pre-commit/action@v3.0.1
+
+  test:
+    name: Python
+    runs-on: ${{ matrix.os }}
+    strategy:
+      fail-fast: false
+      matrix:
+        python: [ "3.10", 3.13 ]
+        os:  [ macos-latest, ubuntu-24.04, windows-latest ]
+    defaults:
+      run:
+        shell: bash
+    steps:
+      - name: Cancel Previous Runs
+        uses: styfle/cancel-workflow-action@0.12.1
+        with:
+          access_token: ${{ github.token }}
+
+      - name: Checkout
+        uses: actions/checkout@v4.2.2
+
+      - name: Install uv and set the python version
+        uses: astral-sh/setup-uv@v6
+        with:
+          python-version: ${{ matrix.python }}
+          version: "0.8.15"
+
+      - name: Install dependencies
+        run: |
+          uv venv
+          uv pip install -r pyproject.toml --extra test
+
+      - name: Run tests
+        run: |
+          NUMBA_DISABLE_JIT=1 uv run --no-sync python -m pytest -vv --cov=tsdate --cov-report=xml --cov-branch -n0 tests
+
+      - name: Upload coverage to Codecov
+        uses: codecov/codecov-action@v5.4.0
+        with:
+          token: ${{ secrets.CODECOV_TOKEN }}
+          fail_ci_if_error: false
+          flags: python-tests
+          name: codecov-umbrella
+          verbose: true
+
+      - name: Build distribution
+        run: |
+          uv run --no-sync python -m build

.github/workflows/wheels.yml

@@ -19,7 +19,7 @@ jobs:
         with:
             submodules: true
 
-      - name: Set up Python 3.10
+      - name: Set up Python
         uses: actions/setup-python@v5.4.0
         with:
           python-version: "3.10"
@@ -42,7 +42,7 @@ jobs:
     runs-on: macos-13
     strategy:
       matrix:
-        python: [3.8, 3.8, 3.9, "3.10", 3.11]
+        python: ["3.10", 3.13]
     steps:
       - name: Download wheels
         uses: actions/download-artifact@v4.2.0
@@ -67,7 +67,7 @@ jobs:
     runs-on: windows-latest
     strategy:
       matrix:
-        python: [3.8, 3.9, "3.10", 3.11]
+        python: ["3.10", 3.13]
         wordsize: [64]
     steps:
       - name: Download wheels
@@ -93,7 +93,7 @@ jobs:
     needs: ['manylinux']
     strategy:
       matrix:
-        python: [3.8, 3.9, "3.10", 3.11]
+        python: ["3.10", 3.13]
     steps:
       - name: Download wheels
         uses: actions/download-artifact@v4.2.0

CHANGELOG.md

@@ -2,6 +2,8 @@
 
 ## [0.2.4] - 2025-XX-XX
 
+- Add support for Python 3.13, minimum version is now 3.10.
+
 
 ## [0.2.3] - 2025-06-07
 

pyproject.toml

@@ -23,11 +23,10 @@ classifiers = [
     "Intended Audience :: Developers",
     "License :: OSI Approved :: MIT License",
     "Programming Language :: Python :: 3",
-    "Programming Language :: Python :: 3.8",
-    "Programming Language :: Python :: 3.9",
     "Programming Language :: Python :: 3.10",
     "Programming Language :: Python :: 3.11",
     "Programming Language :: Python :: 3.12",
+    "Programming Language :: Python :: 3.13",
 ]
 dependencies = [
     "tskit>=0.6.0",
@@ -46,6 +45,7 @@ text = "MIT"
 
 [project.optional-dependencies]
 test = [
+    "numcodecs>=0.6,<0.15.1", #Pinned due to https://github.com/zarr-developers/numcodecs/issues/733
     "pytest==8.4.2",
     "pytest-xdist==3.8.0",
     "pytest-cov==6.3.0",

setup.cfg

@@ -15,10 +15,10 @@ project_urls =
 classifiers =
     Programming Language :: Python
     Programming Language :: Python :: 3
-    Programming Language :: Python :: 3.8
-    Programming Language :: Python :: 3.9
     Programming Language :: Python :: 3.10
     Programming Language :: Python :: 3.11
+    Programming Language :: Python :: 3.12
+    Programming Language :: Python :: 3.13
     Programming Language :: Python :: 3 :: Only
     License :: OSI Approved :: MIT License
     Development Status :: 3 - Alpha
@@ -44,7 +44,7 @@ platforms =
 
 [options]
 packages = tsdate
-python_requires = >=3.8
+python_requires = >=3.10
 include_package_data = True
 install_requires =
     numpy