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@yamadashy yamadashy commented Dec 3, 2025

Summary

This PR removes the Zod v3 compatibility workarounds that were introduced in #923 when we upgraded to Zod v4.

MCP SDK v1.24.0 now fully supports Zod v4 (see PR #1040), allowing us to unify Zod usage across the entire codebase.

Changes

  1. Updated MCP SDK version:

    • @modelcontextprotocol/sdk: ^1.22.0^1.24.0
  2. Removed Zod v3 workarounds from MCP files:

    • Removed @ts-nocheck comments from all MCP tool and prompt files
    • Changed import { z } from 'zod/v3' to import { z } from 'zod'
    • Removed .shape as any casts and associated biome-ignore comments
    • Pass Zod schemas directly to registerTool() instead of .shape
  3. Removed MCP-specific tsconfig:

    • Deleted src/mcp/tsconfig.json (was only needed for Zod v3 type compatibility)

Files Changed

  • package.json - MCP SDK version bump
  • src/mcp/tsconfig.json - Deleted
  • src/mcp/tools/fileSystemReadDirectoryTool.ts
  • src/mcp/tools/fileSystemReadFileTool.ts
  • src/mcp/tools/packCodebaseTool.ts
  • src/mcp/tools/packRemoteRepositoryTool.ts
  • src/mcp/tools/readRepomixOutputTool.ts
  • src/mcp/tools/grepRepomixOutputTool.ts
  • src/mcp/tools/attachPackedOutputTool.ts
  • src/mcp/tools/mcpToolRuntime.ts
  • src/mcp/prompts/packRemoteRepositoryPrompts.ts

Result

  • Lines removed: 92
  • Lines added: 24
  • Net reduction: 68 lines of compatibility code

References

Checklist

  • Run npm run test
  • Run npm run lint

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Walkthrough

This pull request upgrades the Zod SDK integration by updating the MCP SDK dependency to version 1.24.0 and removing v3-specific compatibility workarounds. All tool and prompt files transition from zod/v3 imports to standard zod imports, with schema definitions passed directly instead of via .shape as any type casts.

Changes

Cohort / File(s) Summary
Dependency upgrade
package.json
Updated @modelcontextprotocol/sdk from ^1.22.0 to ^1.24.0
Prompt files
src/mcp/prompts/packRemoteRepositoryPrompts.ts
Replaced Zod v3 import with standard import; removed legacy compatibility comments
Tool files—schema wiring updates
src/mcp/tools/attachPackedOutputTool.ts, fileSystemReadDirectoryTool.ts, fileSystemReadFileTool.ts, grepRepomixOutputTool.ts, packCodebaseTool.ts, packRemoteRepositoryTool.ts, readRepomixOutputTool.ts
Replaced Zod v3 imports with standard imports; removed .shape as any casts for inputSchema and outputSchema, now passing schema objects directly
Type checking directive removal
src/mcp/tools/mcpToolRuntime.ts
Removed // @ts-nocheck`` comment related to Zod v3 compatibility

Estimated code review effort

🎯 2 (Simple) | ⏱️ ~10 minutes

  • Large but homogeneous changes following a consistent pattern across all files
  • Changes are primarily import statement updates and schema wiring adjustments with no logic modifications
  • All files follow the same removal pattern: v3 compatibility shims and type-casting workarounds

Areas for attention:

  • Verify that schema objects are correctly typed without the .shape as any workaround in each tool file
  • Confirm the SDK version bump (1.24.0) is compatible with all tool registrations

Possibly related PRs

  • PR #756: Adds attach_packed_output tool to the same file (src/mcp/tools/attachPackedOutputTool.ts) being updated in this PR.
  • PR #854: Modifies src/mcp/tools/readRepomixOutputTool.ts schema definitions, intersecting with this PR's schema wiring changes.
  • PR #923: Likely a prior Zod compatibility attempt, potentially introducing or addressing the v3 shims that this PR removes.

Pre-merge checks and finishing touches

✅ Passed checks (3 passed)
Check name Status Explanation
Title check ✅ Passed The title clearly and concisely summarizes the main change: removing Zod v3 compatibility workarounds across the MCP codebase.
Docstring Coverage ✅ Passed No functions found in the changed files to evaluate docstring coverage. Skipping docstring coverage check.
Description check ✅ Passed The pull request description is comprehensive and follows the template structure with all required sections completed, including summary, changes breakdown, files changed, results, and references.

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Summary of Changes

Hello @yamadashy, I'm Gemini Code Assist1! I'm currently reviewing this pull request and will post my feedback shortly. In the meantime, here's a summary to help you and other reviewers quickly get up to speed!

This pull request focuses on a significant refactoring effort to eliminate legacy Zod v3 compatibility code. By upgrading the MCP SDK to a version that fully supports Zod v4, the project can now leverage a unified Zod implementation, leading to a more consistent, type-safe, and streamlined codebase. This change reduces technical debt and simplifies future development by removing unnecessary workarounds.

Highlights

  • MCP SDK Version Update: The @modelcontextprotocol/sdk dependency has been updated from ^1.22.0 to ^1.24.0, enabling full Zod v4 support.
  • Zod v3 Compatibility Workarounds Removed: All Zod v3 compatibility workarounds, including @ts-nocheck comments, import { z } from 'zod/v3' statements, and .shape as any casts with their associated biome-ignore comments, have been removed.
  • Direct Zod Schema Usage: Zod schemas are now passed directly to registerTool() functions, simplifying tool registration and improving type safety.
  • Codebase Simplification: This refactoring results in a net reduction of 56 lines of compatibility code, making the codebase cleaner and easier to maintain.
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Code Review

This is an excellent refactoring that successfully removes the Zod v3 compatibility workarounds. By upgrading the @modelcontextprotocol/sdk dependency, you've cleanly removed the @ts-nocheck comments, updated the Zod imports, and eliminated the .shape as any casts. The changes are applied consistently across all the relevant MCP files, making the codebase more maintainable and unifying the Zod version. Great work!

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Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 90.38%. Comparing base (8751404) to head (7a272d1).
⚠️ Report is 1 commits behind head on main.

Additional details and impacted files
@@           Coverage Diff           @@
##             main     #992   +/-   ##
=======================================
  Coverage   90.38%   90.38%           
=======================================
  Files         110      110           
  Lines        7890     7890           
  Branches     1528     1528           
=======================================
  Hits         7131     7131           
  Misses        759      759           

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claude bot commented Dec 3, 2025

🔍 Code Review by Claude

Overall Assessment

This PR successfully removes Zod v3 compatibility workarounds after the MCP SDK v1.24.0 update. The changes are clean, well-structured, and follow the project's coding guidelines. The refactoring reduces technical debt by eliminating 56 lines of compatibility code while maintaining functionality.

✅ Strengths

  1. Clean migration: All Zod v3 workarounds have been systematically removed
  2. Type safety improvements: Removal of @ts-nocheck comments restores full TypeScript type checking
  3. Simplified code: Direct schema passing to registerTool() improves readability and maintainability
  4. Consistent imports: Unified Zod import pattern across the MCP module

🎯 Code Quality & Best Practices

Details
  • Import consistency: All files now use import { z } from 'zod' (not 'zod/v3')
  • Schema validation: Direct schema passing ensures compile-time type safety
  • Documentation: Comments explaining the previous workarounds have been appropriately removed
  • File organization: Changes are properly scoped to MCP-related files only

⚠️ Potential Considerations

Details
  1. Error handling compatibility: While the main codebase handles Zod v4's ZodError.issues structure, verify that MCP tool error handlers are also compatible
  2. Runtime validation: Consider adding integration tests for schema validation failures in MCP tools
  3. Version constraints: The minimum MCP SDK version (^1.24.0) should be documented for future maintainers

🔬 Premortem Analysis

Potential failure scenarios and mitigations

Scenario 1: Schema validation mismatch

  • Risk: Zod v4 may have subtle behavioral differences in schema validation
  • Impact: Could cause runtime errors when MCP clients send invalid data
  • Mitigation: Already mitigated - tests are passing. Consider adding specific edge case tests for complex schemas

Scenario 2: Third-party MCP client compatibility

  • Risk: Older MCP clients might expect different error structures
  • Impact: Error messages might not be properly displayed in some clients
  • Mitigation: The MCP SDK handles this abstraction layer, minimal risk

Scenario 3: Future Zod updates

  • Risk: Future Zod versions might introduce breaking changes
  • Impact: Could require similar refactoring efforts
  • Mitigation: Pin to Zod v4 minor version (^4.1.13) provides stability while allowing patch updates

🚢 Deployment & Integration Risks

Details
  • Low risk: Changes are compile-time validated and all tests pass
  • No breaking changes: External API remains unchanged
  • Rollback strategy: Simple - revert to previous commit if issues arise

✨ Recommendations

  1. Consider adding a test specifically for Zod schema validation errors in MCP tools
  2. Document the minimum MCP SDK version requirement in README or migration guide
  3. Monitor for any runtime issues after deployment, particularly around error handling

Verdict: APPROVED

This is a well-executed technical debt reduction that improves code quality and maintainability. The systematic approach to removing workarounds and the thorough testing give confidence in the changes.


Review performed by Claude (claude-opus-4-1-20250805) following the project's CLAUDE.md guidelines

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Actionable comments posted: 0

Caution

Some comments are outside the diff and can’t be posted inline due to platform limitations.

⚠️ Outside diff range comments (1)
src/mcp/tools/grepRepomixOutputTool.ts (1)

244-263: Context separator in formatSearchResults may insert extra -- blocks

Unrelated to this PR’s Zod changes, but while here: the gap check

if (resultLines.length > 0 && start > Math.min(...addedLines) + 1) {
  resultLines.push('--');
}

uses the minimum added line index. This can add a -- separator even when a new match’s context overlaps or directly abuts the most recent context block. Comparing to the maximum added index would better reflect “there is a gap after the last emitted line”:

-    if (resultLines.length > 0 && start > Math.min(...addedLines) + 1) {
+    const maxAdded = Math.max(...addedLines);
+    if (resultLines.length > 0 && start > maxAdded + 1) {
       resultLines.push('--');
     }

Not urgent, but worth tightening when you next touch this helper.

🧹 Nitpick comments (1)
src/mcp/prompts/packRemoteRepositoryPrompts.ts (1)

27-29: Stale comment about “compress” parameter

Minor nit: the comment // Convert compress string to boolean no longer matches the handler signature (no compress argument). Consider removing or updating it to avoid confusion for future maintainers.

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Reviewing files that changed from the base of the PR and between 8751404 and f9f29cf.

⛔ Files ignored due to path filters (1)
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📒 Files selected for processing (10)
  • package.json (1 hunks)
  • src/mcp/prompts/packRemoteRepositoryPrompts.ts (1 hunks)
  • src/mcp/tools/attachPackedOutputTool.ts (2 hunks)
  • src/mcp/tools/fileSystemReadDirectoryTool.ts (2 hunks)
  • src/mcp/tools/fileSystemReadFileTool.ts (2 hunks)
  • src/mcp/tools/grepRepomixOutputTool.ts (2 hunks)
  • src/mcp/tools/mcpToolRuntime.ts (0 hunks)
  • src/mcp/tools/packCodebaseTool.ts (2 hunks)
  • src/mcp/tools/packRemoteRepositoryTool.ts (2 hunks)
  • src/mcp/tools/readRepomixOutputTool.ts (2 hunks)
💤 Files with no reviewable changes (1)
  • src/mcp/tools/mcpToolRuntime.ts
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🔇 Additional comments (10)
package.json (1)

75-81: MCP SDK version bump looks consistent with Zod v4 migration

Updating @modelcontextprotocol/sdk to ^1.24.0 is aligned with switching off zod/v3 and using native Zod v4 schemas. Since this relies on external SDK behavior, just confirm against the 1.24.0 release notes that registerTool/prompt now officially accept Zod v4 schemas directly (which your PR description suggests).

src/mcp/tools/fileSystemReadDirectoryTool.ts (1)

5-5: Direct Zod v4 schemas in tool registration look correct

Switching to import { z } from 'zod' and wiring inputSchema: fileSystemReadDirectoryInputSchema / outputSchema: fileSystemReadDirectoryOutputSchema matches the new MCP SDK expectations and keeps the z.infer<...> satisfies check meaningful. No functional change beyond using full schemas.

Also applies to: 31-32

src/mcp/tools/fileSystemReadFileTool.ts (1)

5-5: Schema wiring aligned with Zod v4 + MCP SDK

The move to import { z } from 'zod' and passing fileSystemReadFileInputSchema / fileSystemReadFileOutputSchema directly into registerTool is consistent with the directory tool and keeps the satisfies z.infer<...> guard accurate. No issues from a typing or runtime perspective.

Also applies to: 32-33

src/mcp/tools/grepRepomixOutputTool.ts (1)

4-4: Zod v4 integration and schema usage are consistent

Using import { z } from 'zod' and passing grepRepomixOutputInputSchema/grepRepomixOutputOutputSchema directly into registerTool matches the new MCP SDK pattern and keeps the output object validated via satisfies z.infer<...>. Looks good and behaviorally equivalent to the prior .shape workaround.

Also applies to: 87-88

src/mcp/tools/packCodebaseTool.ts (1)

4-4: Pack-codebase tool now correctly exposes full Zod schemas

The change to import { z } from 'zod' and to use packCodebaseInputSchema / packCodebaseOutputSchema directly in registerTool is consistent with the MCP SDK upgrade and with other tools in this PR. The runtime behavior and CLI orchestration remain unchanged.

Also applies to: 67-68

src/mcp/tools/attachPackedOutputTool.ts (1)

5-5: Attach-packed-output tool Zod wiring matches new pattern

Importing z from 'zod' and passing attachPackedOutputInputSchema / attachPackedOutputOutputSchema straight into registerTool aligns with the other MCP tools and the SDK’s Zod v4 support. The metrics computation and call to formatPackToolResponse are untouched.

Also applies to: 258-259

src/mcp/tools/readRepomixOutputTool.ts (1)

4-4: Read-output tool correctly updated to Zod v4 schemas

The switch to import { z } from 'zod' and using readRepomixOutputInputSchema / readRepomixOutputOutputSchema directly in registerTool is consistent with the rest of the MCP tools. The return payload is still checked via satisfies z.infer<...>, so the schema and implementation stay in sync.

Also applies to: 43-44

src/mcp/prompts/packRemoteRepositoryPrompts.ts (1)

2-2: Prompt Zod import updated cleanly to v4

Updating the prompt file to import { z } from 'zod' keeps its argument schema consistent with the rest of the MCP layer and with the new SDK version; no behavior change.

src/mcp/tools/packRemoteRepositoryTool.ts (2)

4-4: LGTM! Clean upgrade to standard Zod import.

The transition from zod/v3 to the standard zod import is correct for Zod v4. This aligns with the MCP SDK v1.24.0 upgrade that adds native Zod v4 support.


71-72: LGTM! Proper Zod v4 schema registration.

Passing schemas directly to inputSchema and outputSchema is the correct approach for Zod v4, eliminating the .shape as any workarounds needed for v3 compatibility. This improves type safety and aligns with the MCP SDK's updated expectations.

@yamadashy yamadashy force-pushed the refactor/remove-zod-v3-compat branch from f9f29cf to edd18cc Compare December 4, 2025 14:09
@claude
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claude bot commented Dec 4, 2025

🔍 Code Review by Claude

Overall Assessment

Excellent refactoring PR that successfully removes Zod v3 compatibility workarounds following the MCP SDK v1.24.0 upgrade. The changes are clean, consistent, and improve code maintainability by eliminating 68 lines of technical debt.

✅ Strengths

  • Clean migration: Systematic removal of all Zod v3 workarounds (@ts-nocheck, .shape as any, zod/v3 imports)
  • Type safety restored: Full TypeScript type checking is now enabled across all MCP files
  • Simplified API: Direct schema passing to registerTool() improves readability
  • Consistent approach: All 11 MCP files follow the same refactoring pattern

🎯 Code Quality

Details

The refactoring maintains high code quality:

  • Import statements are now consistent using import { z } from 'zod'
  • Schema objects are passed directly without type casting
  • Removal of the MCP-specific tsconfig.json simplifies the build configuration
  • The satisfies operator still ensures type safety at the response level

⚠️ Minor Observations

Details
  1. Stale comment in packRemoteRepositoryPrompts.ts: Line 27 has a comment "Convert compress string to boolean" but the handler no longer has a compress parameter. Consider removing this outdated comment.

  2. Package-lock.json changes: Several dependencies have their peer: true flag removed. While this appears to be an automatic npm update, it's worth verifying these changes are intentional.

🔬 Premortem Analysis

Potential failure scenarios

Low-risk scenarios identified:

  1. Schema validation differences: Zod v4 might have subtle behavioral changes compared to v3, but tests are passing which mitigates this risk
  2. MCP client compatibility: Older clients expecting different error structures, though the MCP SDK should handle this abstraction
  3. Runtime type errors: Direct schema passing could expose type mismatches, but TypeScript compilation catches these

Mitigation: All tests are passing and the changes are compile-time validated, indicating minimal risk.

✨ Recommendations

  1. Remove the outdated comment about "compress" parameter in packRemoteRepositoryPrompts.ts
  2. Consider adding a test that specifically validates Zod v4 error handling in MCP tools
  3. Document the minimum MCP SDK version requirement (1.24.0) in the project documentation

Verdict: APPROVED

This is a well-executed technical debt reduction that improves code quality without introducing breaking changes. The systematic approach and passing tests provide confidence in the migration.


Reviewed by Claude (claude-opus-4-1-20250805) following project conventions

MCP SDK 1.24.0 now fully supports Zod v4, allowing us to remove the
compatibility workarounds that were introduced in #923.

Changes:
- Update @modelcontextprotocol/sdk from ^1.22.0 to ^1.24.0
- Remove @ts-nocheck comments from all MCP tool and prompt files
- Change imports from 'zod/v3' to 'zod'
- Remove .shape as any casts and biome-ignore comments
- Pass Zod schemas directly to registerTool() instead of .shape
- Remove src/mcp/tsconfig.json (no longer needed without Zod v3)
@yamadashy yamadashy force-pushed the refactor/remove-zod-v3-compat branch from edd18cc to 7a272d1 Compare December 4, 2025 14:18
@claude
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claude bot commented Dec 4, 2025

🔍 Code Review by Claude

Overall Assessment

This PR successfully removes Zod v3 compatibility workarounds after the MCP SDK v1.24.0 update. The changes are clean, well-structured, and follow the project's coding guidelines. The refactoring reduces technical debt by eliminating 68 lines of compatibility code while maintaining functionality.

✅ Strengths

  1. Clean migration: All Zod v3 workarounds have been systematically removed across 11 MCP-related files
  2. Type safety improvements: Removal of @ts-nocheck comments restores full TypeScript type checking
  3. Simplified code: Direct schema passing to registerTool() improves readability and maintainability
  4. Consistent imports: Unified Zod import pattern (import { z } from 'zod') across the MCP module
  5. Follows conventions: Commit message follows conventional commits format with proper scope: refactor(mcp)

🎯 Code Quality & Best Practices

Details
  • Import consistency: All files now use standard Zod imports instead of 'zod/v3'
  • Schema validation: Direct schema passing ensures compile-time type safety
  • Documentation: Comments explaining the previous workarounds have been appropriately removed
  • File organization: Changes are properly scoped to MCP-related files only
  • Testing: PR checklist indicates tests pass (npm run test ✅) and linting is clean (npm run lint ✅)

⚠️ Potential Considerations

Details
  1. Runtime validation compatibility: While tests are passing, consider monitoring for any edge cases in schema validation behavior between Zod v3 and v4
  2. MCP client compatibility: Older MCP clients should still work fine as the SDK handles the abstraction
  3. Version documentation: Consider documenting the minimum MCP SDK version requirement (^1.24.0) in the README for future maintainers

🔬 Premortem Analysis

Potential failure scenarios and mitigations

Scenario 1: Schema validation differences

  • Risk: Zod v4 may have subtle behavioral differences in edge cases
  • Impact: Could cause runtime validation errors for unusual input
  • Mitigation: Tests passing provides good coverage; monitor logs post-deployment

Scenario 2: Dependency conflicts

  • Risk: Other packages might have peer dependency constraints
  • Impact: Installation issues in certain environments
  • Mitigation: package-lock.json shows clean resolution; low risk

Scenario 3: Future Zod updates

  • Risk: Zod v5 might introduce breaking changes requiring similar refactoring
  • Impact: Future technical debt
  • Mitigation: Current pinning to ^4.1.13 provides stability while allowing patches

🚢 Deployment & Integration Risks

Details
  • Low risk: Changes are compile-time validated and all tests pass
  • No breaking changes: External MCP tool API remains unchanged
  • Rollback strategy: Simple - revert to previous commit if issues arise
  • Monitoring: Watch for any Zod validation errors in production logs

✨ Recommendations

  1. Consider adding integration tests specifically for Zod v4 schema validation edge cases in MCP tools
  2. Document the MCP SDK v1.24.0 minimum requirement in the project documentation
  3. Monitor production logs for any unexpected validation errors after deployment
  4. Consider creating a migration guide if other projects use similar Zod v3 workarounds

Verdict: APPROVED

This is a well-executed technical debt reduction that improves code quality and maintainability. The systematic removal of workarounds, thorough testing, and clean implementation give high confidence in the changes. The 68-line reduction in compatibility code makes the codebase significantly cleaner.


Review performed by Claude (claude-opus-4-1-20250805) following the project's CLAUDE.md guidelines

@yamadashy yamadashy merged commit 8a9db9d into main Dec 4, 2025
54 checks passed
@yamadashy yamadashy deleted the refactor/remove-zod-v3-compat branch December 4, 2025 14:30
@yamadashy yamadashy restored the refactor/remove-zod-v3-compat branch December 4, 2025 14:30
@yamadashy yamadashy deleted the refactor/remove-zod-v3-compat branch December 4, 2025 14:34
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