test: add new tests for run_ingest_query directory processing and clone_repo async timeout

[filipchristiansen]

Overview

This PR introduces two new tests to improve coverage for critical functionality in our ingestion and cloning logic:

1. test_run_ingest_query

   • Ensures that run_ingest_query correctly processes directories, generates the proper summary, and includes file contents in the expected structure.

2. test_clone_repo_with_timeout

   • Verifies that the clone_repo function raises an AsyncTimeoutError if the cloning process exceeds the specified time limit (via async_timeout).

Details

• test_run_ingest_query:
  • Uses temp_directory and a sample_query fixture to set up a mock repository structure.
  • Calls run_ingest_query and asserts that the summary and content match the known directory structure.
• test_clone_repo_with_timeout:
  • Mocks the _run_git_command function to force an asyncio.TimeoutError.
  • Expects the AsyncTimeoutError from our async_timeout decorator, confirming correct timeout handling.

Rationale

• Expanding test coverage helps ensure reliability and prevent regressions.
• Verifying the timeout behavior guards against potential hangs or long-running clone operations.

Notes

• No changes to core functionality; these tests only confirm existing behavior.
• Includes minor additions to test_query_ingestion.py and test_repository_clone.py.

Please review and let me know if further adjustments or refinements are needed!